Lineage for Superfamily b.82.2: Clavaminate synthase-like

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2403751Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2404605Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold

Families:

  1. 2404606b.82.2.1: Penicillin synthase-like [51198] (5 proteins)
    common fold is rather distorted
  2. 2404696b.82.2.2: Clavaminate synthase [51203] (1 protein)
  3. 2404704b.82.2.3: Gab protein (hypothetical protein YgaT) [63855] (2 proteins)
    automatically mapped to Pfam PF08943
  4. 2404712b.82.2.4: Type II Proline 3-hydroxylase (proline oxidase) [63858] (1 protein)
  5. 2404719b.82.2.5: TauD/TfdA-like [75038] (5 proteins)
    automatically mapped to Pfam PF02668
  6. 2404792b.82.2.6: Hypoxia-inducible factor HIF ihhibitor (FIH1) [82194] (1 protein)
  7. 2404829b.82.2.7: YhcH-like [89413] (1 protein)
    automatically mapped to Pfam PF04074
  8. 2404840b.82.2.8: gamma-Butyrobetaine hydroxylase [89416] (3 proteins)
    Pfam PF03322
  9. 2404861b.82.2.9: PhyH-like [141623] (3 proteins)
    Pfam PF05721
  10. 2404877b.82.2.10: AlkB-like [141628] (3 proteins)
    automatically mapped to Pfam PF13532
  11. 2404922b.82.2.11: Asparaginyl hydroxylase-like [141633] (1 protein)
    Pfam PF08007
  12. 2404929b.82.2.12: YbiU-like [141636] (2 proteins)
    Pfam PF07350; DUF1479
  13. 2404937b.82.2.13: TehB-like [159307] (2 proteins)
    Pfam PF09313; DUF1971
  14. 2404954b.82.2.14: Histone demethylase core [254153] (4 proteins)
    Jumonji domain; Pfam PF02375 (JmjN) and Pfam PF02373 (JmjC); relationship to FIH1 (b.82.2.6) described in PubMed 16983801
  15. 2405353b.82.2.15: proly-4-hydroxylase (P4H, PHD) like [254173] (3 proteins)
    Pfam PF13640; PubMed 16782814
  16. 2405395b.82.2.0: automated matches [191672] (1 protein)
    not a true family

More info for Superfamily b.82.2: Clavaminate synthase-like

Timeline for Superfamily b.82.2: Clavaminate synthase-like: