SCOPe 2.08: Protein: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC

Lineage for Protein: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)

Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
one turn of helix is made by two pairs of antiparallel strands linked with short turns
has appearance of a sandwich of distinct architecture and jelly-roll topology

Superfamily b.82.1: RmlC-like cupins [51182] (25 families)
Family b.82.1.1: dTDP-sugar isomerase [51183] (5 proteins)
Protein dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [51184] (6 species)
synonym: dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase

Species:

Methanobacterium thermoautotrophicum [TaxId:145262] [51186] (2 PDB entries)
1. Domain for 1ep0:
  - Domain d1ep0a_: 1ep0 A: [28080]
2. Domain for 1epz:
  - Domain d1epza_: 1epz A: [28081]
    complexed with tyd
Mycobacterium tuberculosis [TaxId:1773] [101971] (3 PDB entries)
1. Domains for 1pm7:
  1. Domain d1pm7a_: 1pm7 A: [94895]
    complexed with act, gol
  2. Domain d1pm7b_: 1pm7 B: [94896]
    complexed with act, gol
2. Domain for 1upi:
  - Domain d1upia_: 1upi A: [99757]
3. Domains for 2ixc:
  1. Domain d2ixca_: 2ixc A: [137765]
    automated match to d1upia_
    complexed with trh
  2. Domain d2ixcb_: 2ixc B: [137766]
    automated match to d1upia_
    complexed with trh
  3. Domain d2ixcc_: 2ixc C: [137767]
    automated match to d1upia_
    complexed with trh
  4. Domain d2ixcd_: 2ixc D: [137768]
    automated match to d1upia_
    complexed with trh
Pseudomonas aeruginosa [TaxId:287] [101972] (5 PDB entries)
1. Domain for 1rtv:
  - Domain d1rtva1: 1rtv A:1-181 [97822]
    Other proteins in same PDB: d1rtva2
    complexed with srt
2. Domains for 2ixh:
  1. Domain d2ixha2: 2ixh A:4-184 [137769]
    Other proteins in same PDB: d2ixha3, d2ixhb3
    automated match to d1rtva_
    complexed with trh
  2. Domain d2ixhb2: 2ixh B:4-184 [137770]
    Other proteins in same PDB: d2ixha3, d2ixhb3
    automated match to d1rtva_
    complexed with trh
3. Domains for 2ixi:
  1. Domain d2ixia_: 2ixi A: [165737]
    automated match to d1rtva_
    complexed with srt, tyd
  2. Domain d2ixib_: 2ixi B: [165738]
    automated match to d1rtva_
    complexed with srt, tyd
4. Domain for 2ixj:
  - Domain d2ixja2: 2ixj A:4-184 [137771]
    Other proteins in same PDB: d2ixja3
    automated match to d1rtva_
    complexed with srt
5. Domains for 2ixk:
  1. Domain d2ixka_: 2ixk A: [165739]
    automated match to d1rtva_
    complexed with tdo
  2. Domain d2ixkb_: 2ixk B: [165740]
    automated match to d1rtva_
    complexed with tdo
Salmonella typhimurium [TaxId:90371] [51185] (2 PDB entries)
1. Domains for 1dzr:
  1. Domain d1dzra_: 1dzr A: [28076]
    complexed with gol, so4
  2. Domain d1dzrb_: 1dzr B: [28077]
    complexed with gol, so4
2. Domains for 1dzt:
  1. Domain d1dzta_: 1dzt A: [28078]
    complexed with aty, gol, so4, tpe
  2. Domain d1dztb_: 1dzt B: [28079]
    complexed with aty, gol, so4, tpe
Streptococcus suis [TaxId:1307] [89402] (4 PDB entries)
1. Domains for 1nxm:
  1. Domain d1nxma_: 1nxm A: [86385]
  2. Domain d1nxmb_: 1nxm B: [86386]
2. Domains for 1nyw:
  1. Domain d1nywa_: 1nyw A: [86429]
    complexed with dau
  2. Domain d1nywb_: 1nyw B: [86430]
    complexed with dau
3. Domains for 1nzc:
  1. Domain d1nzca_: 1nzc A: [86445]
    complexed with ni, tdx
  2. Domain d1nzcb_: 1nzc B: [86446]
    complexed with ni, tdx
  3. Domain d1nzcc_: 1nzc C: [86447]
    complexed with ni, tdx
  4. Domain d1nzcd_: 1nzc D: [86448]
    complexed with ni, tdx
4. Domains for 2ixl:
  1. Domain d2ixla_: 2ixl A: [137772]
    automated match to d1nzca_
    complexed with ni, trh
  2. Domain d2ixlb_: 2ixl B: [137773]
    automated match to d1nzca_
    complexed with ni, trh
  3. Domain d2ixlc_: 2ixl C: [137774]
    automated match to d1nzca_
    complexed with ni, trh
  4. Domain d2ixld_: 2ixl D: [137775]
    automated match to d1nzca_
    complexed with ni, trh
Sulfolobus tokodaii [TaxId:111955] [141586] (2 PDB entries)
Uniprot Q96Z62 1-176
1. Domains for 1wlt:
  1. Domain d1wlta1: 1wlt A:1-176 [121013]
  2. Domain d1wltb_: 1wlt B: [121014]
    automated match to d1wlta1
2. Domains for 2b9u:
  1. Domain d2b9ua_: 2b9u A: [163018]
    automated match to d1wlta1
  2. Domain d2b9ub_: 2b9u B: [163019]
    automated match to d1wlta1
  3. Domain d2b9uc_: 2b9u C: [163020]
    automated match to d1wlta1
  4. Domain d2b9ud_: 2b9u D: [163021]
    automated match to d1wlta1
  5. Domain d2b9ue_: 2b9u E: [163022]
    automated match to d1wlta1
  6. Domain d2b9uf_: 2b9u F: [163023]
    automated match to d1wlta1
  7. Domain d2b9ug_: 2b9u G: [163024]
    automated match to d1wlta1
  8. Domain d2b9uh_: 2b9u H: [163025]
    automated match to d1wlta1
  9. Domain d2b9ui_: 2b9u I: [163026]
    automated match to d1wlta1
  10. Domain d2b9uj_: 2b9u J: [163027]
    automated match to d1wlta1
  11. Domain d2b9uk_: 2b9u K: [163028]
    automated match to d1wlta1
  12. Domain d2b9ul_: 2b9u L: [163029]
    automated match to d1wlta1

More info for Protein dTDP-4-dehydrorhamnose 3,5-epimerase RmlC from b.82.1.1: dTDP-sugar isomerase

Timeline for Protein dTDP-4-dehydrorhamnose 3,5-epimerase RmlC from b.82.1.1: dTDP-sugar isomerase:

Protein dTDP-4-dehydrorhamnose 3,5-epimerase RmlC from b.82.1.1: dTDP-sugar isomerase first appeared (with stable ids) in SCOP 1.55, called Protein dTDP-4-dehydrorhamnose 3,5-epimerase RmlC from b.82.1.1: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
Protein dTDP-4-dehydrorhamnose 3,5-epimerase RmlC from b.82.1.1: dTDP-sugar isomerase appears in SCOPe 2.07