Lineage for Superfamily b.82.1: RmlC-like cupins

  1. Root: SCOP 1.71
  2. 546417Class b: All beta proteins [48724] (149 folds)
  3. 567256Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 567257Superfamily b.82.1: RmlC-like cupins [51182] (16 families) (S)

Families:

  1. 567258b.82.1.1: dTDP-sugar isomerase [51183] (2 proteins)
  2. 567289b.82.1.2: Germin/Seed storage 7S protein [51187] (4 proteins)
  3. 567399b.82.1.3: Type I phosphomannose isomerase [51191] (2 proteins)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin
  4. 567407b.82.1.4: Homogentisate dioxygenase [51194] (1 protein)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the C-terminal domain similar to the metal-binding site of germin
  5. 567412b.82.1.5: Quercetin 2,3-dioxygenase [75035] (1 protein)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin
  6. 567435b.82.1.6: Acireductone dioxygenase [82191] (1 protein)
  7. 567439b.82.1.7: Glucose-6-phosphate isomerase, GPI [89403] (1 protein)
  8. 567459b.82.1.8: Hypothetical protein TM1112 [89406] (1 protein)
  9. 567465b.82.1.9: TM1287-like [89409] (2 proteins)
  10. 567473b.82.1.10: Hypothetical protein TM1459 [101976] (1 protein)
  11. 567478b.82.1.11: YlbA-like [101979] (4 proteins)
    Pfam 05899; formerly pfam06038; duplication: consists of two germin-like domains
  12. 567494b.82.1.12: Pirin [101984] (1 protein)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin
  13. 567498b.82.1.13: KduI-like [110318] (1 protein)
    Pfam 04962: duplication: consists of two germin-like domains
  14. 567507b.82.1.14: Ureidoglycolate hydrolase AllA [117312] (1 protein)
    Pfam 04115; beta-hairpin-swapped dimeric protein of the germin-like fold
  15. 567514b.82.1.15: Probable transcriptional regulator VC1968, C-terminal domain [117315] (1 protein)
  16. 567518b.82.1.16: YML079-like [117318] (1 protein)
    Pfam 06172; DUF985

More info for Superfamily b.82.1: RmlC-like cupins

Timeline for Superfamily b.82.1: RmlC-like cupins: