Lineage for Protein: Plant alpha-amylase

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2810331Fold b.71: Glycosyl hydrolase domain [51010] (1 superfamily)
    folded sheet; greek-key
  4. 2810332Superfamily b.71.1: Glycosyl hydrolase domain [51011] (6 families) (S)
    this domain is C-terminal to the catalytic beta/alpha barrel domain
  5. 2810333Family b.71.1.1: alpha-Amylases, C-terminal beta-sheet domain [51012] (22 proteins)
    this domain follows the catalytic beta/alpha barrel domain
  6. 2810735Protein Plant alpha-amylase [51040] (2 species)
    single beta-sheet; probable result of a decay of the common-fold

Species:

  1. 2810736Barley (Hordeum vulgare), AMY1 isozyme [TaxId:4513] [89384] (7 PDB entries)
    1. Domain for 1ht6:
      • 2810737Domain d1ht6a1: 1ht6 A:348-404 [83629]
        Other proteins in same PDB: d1ht6a2
        complexed with ca, edo
        heterogeneous fold; applies to domains that adopt a different fold than the exemplar domain but has similar sequence and number of secondary structures
    2. Domain for 1p6w:
      • 2810744Domain d1p6wa1: 1p6w A:348-404 [94193]
        Other proteins in same PDB: d1p6wa2
        complexed with ca
        heterogeneous fold; applies to domains that adopt a different fold than the exemplar domain but has similar sequence and number of secondary structures
    3. Domain for 1rp8:
      • 2810742Domain d1rp8a1: 1rp8 A:348-404 [118783]
        Other proteins in same PDB: d1rp8a2
        automated match to d1ht6a1
        complexed with ca; mutant

        heterogeneous fold; applies to domains that adopt a different fold than the exemplar domain but has similar sequence and number of secondary structures
    4. Domain for 1rp9:
      • 2810743Domain d1rp9a1: 1rp9 A:348-404 [118785]
        Other proteins in same PDB: d1rp9a2
        automated match to d1ht6a1
        complexed with ca; mutant

        heterogeneous fold; applies to domains that adopt a different fold than the exemplar domain but has similar sequence and number of secondary structures
    5. Domain for 1rpk:
      • 2810741Domain d1rpka1: 1rpk A:348-404 [118787]
        Other proteins in same PDB: d1rpka2
        automated match to d1ht6a1
        complexed with ca

        heterogeneous fold; applies to domains that adopt a different fold than the exemplar domain but has similar sequence and number of secondary structures
    6. Domain for 2qps:
      • 2810745Domain d2qpsa1: 2qps A:348-404 [151207]
        Other proteins in same PDB: d2qpsa2
        automated match to d1ht6a1
        complexed with ca; mutant

        heterogeneous fold; applies to domains that adopt a different fold than the exemplar domain but has similar sequence and number of secondary structures
    7. Domains for 2qpu:
      1. 2810738Domain d2qpua1: 2qpu A:348-404 [151209]
        Other proteins in same PDB: d2qpua2, d2qpub2, d2qpuc2
        automatically matched to d1ht6a1
        complexed with bgc, ca, edo, qpu; mutant

        heterogeneous fold; applies to domains that adopt a different fold than the exemplar domain but has similar sequence and number of secondary structures
      2. 2810739Domain d2qpub1: 2qpu B:348-404 [151211]
        Other proteins in same PDB: d2qpua2, d2qpub2, d2qpuc2
        automatically matched to d1ht6a1
        complexed with bgc, ca, edo, qpu; mutant

        heterogeneous fold; applies to domains that adopt a different fold than the exemplar domain but has similar sequence and number of secondary structures
      3. 2810740Domain d2qpuc1: 2qpu C:348-404 [151213]
        Other proteins in same PDB: d2qpua2, d2qpub2, d2qpuc2
        automatically matched to d1ht6a1
        complexed with bgc, ca, edo, qpu; mutant

        heterogeneous fold; applies to domains that adopt a different fold than the exemplar domain but has similar sequence and number of secondary structures
  2. 2810746Barley (Hordeum vulgare), seeds, AMY2 isozyme [TaxId:4513] [51041] (3 PDB entries)
    1. Domain for 1amy:
      • 2810749Domain d1amya1: 1amy A:347-403 [27799]
        Other proteins in same PDB: d1amya2
        complexed with ca
        heterogeneous fold; applies to domains that adopt a different fold than the exemplar domain but has similar sequence and number of secondary structures
    2. Domains for 1ava:
      1. 2810747Domain d1avaa1: 1ava A:347-403 [27797]
        Other proteins in same PDB: d1avaa2, d1avab2, d1avac_, d1avad_
        complexed with ca
        heterogeneous fold; applies to domains that adopt a different fold than the exemplar domain but has similar sequence and number of secondary structures
      2. 2810748Domain d1avab1: 1ava B:347-403 [27798]
        Other proteins in same PDB: d1avaa2, d1avab2, d1avac_, d1avad_
        complexed with ca
        heterogeneous fold; applies to domains that adopt a different fold than the exemplar domain but has similar sequence and number of secondary structures
    3. Domain for 1bg9:
      • 2810750Domain d1bg9a1: 1bg9 A:347-403 [27800]
        Other proteins in same PDB: d1bg9a2
        complexed with af1, ca
        heterogeneous fold; applies to domains that adopt a different fold than the exemplar domain but has similar sequence and number of secondary structures

More info for Protein Plant alpha-amylase from b.71.1.1: alpha-Amylases, C-terminal beta-sheet domain

Timeline for Protein Plant alpha-amylase from b.71.1.1: alpha-Amylases, C-terminal beta-sheet domain: