SCOPe 2.04: Protein: Elongation factor Tu (EF-Tu)

Lineage for Protein: Elongation factor Tu (EF-Tu)

Root: SCOPe 2.04
Class b: All beta proteins [48724] (176 folds)
Fold b.44: Elongation factor/aminomethyltransferase common domain [50464] (2 superfamilies)
barrel, closed; n=6, S=10; greek-key
Superfamily b.44.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain [50465] (2 families)
probably related to the second domain and its superfamiy by a circular permutation
Family b.44.1.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain [50466] (6 proteins)
Protein Elongation factor Tu (EF-Tu) [50467] (4 species)

Species:

Cow (Bos taurus), mitochondrial [TaxId:9913] [50471] (2 PDB entries)
Uniprot P49410 56-452
1. Domains for 1d2e:
  1. Domain d1d2ea2: 1d2e A:349-451 [25741]
    Other proteins in same PDB: d1d2ea1, d1d2ea3, d1d2eb1, d1d2eb3, d1d2ec1, d1d2ec3, d1d2ed1, d1d2ed3
    protein/RNA complex; complexed with gdp, mg
  2. Domain d1d2eb2: 1d2e B:349-451 [25742]
    Other proteins in same PDB: d1d2ea1, d1d2ea3, d1d2eb1, d1d2eb3, d1d2ec1, d1d2ec3, d1d2ed1, d1d2ed3
    protein/RNA complex; complexed with gdp, mg
  3. Domain d1d2ec2: 1d2e C:349-451 [25743]
    Other proteins in same PDB: d1d2ea1, d1d2ea3, d1d2eb1, d1d2eb3, d1d2ec1, d1d2ec3, d1d2ed1, d1d2ed3
    protein/RNA complex; complexed with gdp, mg
  4. Domain d1d2ed2: 1d2e D:349-451 [25744]
    Other proteins in same PDB: d1d2ea1, d1d2ea3, d1d2eb1, d1d2eb3, d1d2ec1, d1d2ec3, d1d2ed1, d1d2ed3
    protein/RNA complex; complexed with gdp, mg
2. Domain for 1xb2:
  - Domain d1xb2a2: 1xb2 A:349-452 [115055]
    Other proteins in same PDB: d1xb2a1, d1xb2a3, d1xb2b1, d1xb2b2, d1xb2b3

Escherichia coli [TaxId:562] [50468] (8 PDB entries)
Uniprot P02990

Domains for 1d8t:
1. Domain d1d8ta2: 1d8t A:297-393 [25726]
  Other proteins in same PDB: d1d8ta1, d1d8ta3, d1d8tb1, d1d8tb3
  complexed with act, gdp, mg
2. Domain d1d8tb2: 1d8t B:297-393 [25727]
  Other proteins in same PDB: d1d8ta1, d1d8ta3, d1d8tb1, d1d8tb3
  complexed with act, gdp, mg
Domains for 1dg1:
1. Domain d1dg1g2: 1dg1 G:297-393 [25724]
  Other proteins in same PDB: d1dg1g1, d1dg1g3, d1dg1h1, d1dg1h3
  complexed with gdp, mg
2. Domain d1dg1h2: 1dg1 H:297-393 [25725]
  Other proteins in same PDB: d1dg1g1, d1dg1g3, d1dg1h1, d1dg1h3
  complexed with gdp, mg
Domains for 1efc:
1. Domain d1efca2: 1efc A:297-393 [25720]
  Other proteins in same PDB: d1efca1, d1efca3, d1efcb1, d1efcb3
  complexed with gdp, mg
2. Domain d1efcb2: 1efc B:297-393 [25721]
  Other proteins in same PDB: d1efca1, d1efca3, d1efcb1, d1efcb3
  complexed with gdp, mg
Domains for 1efu:
1. Domain d1efua2: 1efu A:297-393 [25722]
  Other proteins in same PDB: d1efua1, d1efua3, d1efub2, d1efub3, d1efub4, d1efuc1, d1efuc3, d1efud2, d1efud3, d1efud4
2. Domain d1efuc2: 1efu C:297-393 [25723]
  Other proteins in same PDB: d1efua1, d1efua3, d1efub2, d1efub3, d1efub4, d1efuc1, d1efuc3, d1efud2, d1efud3, d1efud4
Domain for 1ob2:
- Domain d1ob2a2: 1ob2 A:297-393 [103901]
  Other proteins in same PDB: d1ob2a1, d1ob2a3
  protein/RNA complex; complexed with gnp, kir, mg, suc
Domains for 2bvn:
1. Domain d2bvna2: 2bvn A:297-393 [129283]
  Other proteins in same PDB: d2bvna1, d2bvna3, d2bvnb1, d2bvnb3
  automated match to d1efca2
  complexed with enx, gnp, mg
2. Domain d2bvnb2: 2bvn B:297-393 [129286]
  Other proteins in same PDB: d2bvna1, d2bvna3, d2bvnb1, d2bvnb3
  automated match to d1efca2
  complexed with enx, gnp, mg
Domain for 2fx3:
- Domain d2fx3a2: 2fx3 A:297-392 [134272]
  Other proteins in same PDB: d2fx3a1, d2fx3a3
  automatically matched to d1d8ta2
  complexed with gdp, mg

Domains for 4q7j:

Domain d4q7jb3: 4q7j B:297-393 [259277]
Other proteins in same PDB: d4q7ja1, d4q7ja2, d4q7ja3, d4q7jb1, d4q7jb2, d4q7je1, d4q7je2, d4q7je3, d4q7jf1, d4q7jf2
automated match to d1d8ta2
protein/RNA complex; complexed with so4

Domain d4q7jf3: 4q7j F:297-393 [259280]
Other proteins in same PDB: d4q7ja1, d4q7ja2, d4q7ja3, d4q7jb1, d4q7jb2, d4q7je1, d4q7je2, d4q7je3, d4q7jf1, d4q7jf2
automated match to d1d8ta2
protein/RNA complex; complexed with so4

Thermus aquaticus [TaxId:271] [50469] (4 PDB entries)
1. Domain for 1b23:
  - Domain d1b23p2: 1b23 P:313-405 [25729]
    Other proteins in same PDB: d1b23p1, d1b23p3
    protein/RNA complex; complexed with cys, gnp, mg, so4
2. Domain for 1eft:
  - Domain d1efta2: 1eft A:313-405 [25728]
    Other proteins in same PDB: d1efta1, d1efta3
    complexed with gnp, mg
3. Domains for 1ttt:
  1. Domain d1ttta2: 1ttt A:314-405 [25730]
    Other proteins in same PDB: d1ttta1, d1ttta3, d1tttb1, d1tttb3, d1tttc1, d1tttc3
    protein/RNA complex; complexed with gnp, mg, phe
  2. Domain d1tttb2: 1ttt B:313-405 [25731]
    Other proteins in same PDB: d1ttta1, d1ttta3, d1tttb1, d1tttb3, d1tttc1, d1tttc3
    protein/RNA complex; complexed with gnp, mg, phe
  3. Domain d1tttc2: 1ttt C:313-405 [25732]
    Other proteins in same PDB: d1ttta1, d1ttta3, d1tttb1, d1tttb3, d1tttc1, d1tttc3
    protein/RNA complex; complexed with gnp, mg, phe
4. Domains for 1tui:
  1. Domain d1tuia2: 1tui A:314-405 [25733]
    Other proteins in same PDB: d1tuia1, d1tuia3, d1tuib1, d1tuib3, d1tuic1, d1tuic3
    complexed with gdp, mg
  2. Domain d1tuib2: 1tui B:313-405 [25734]
    Other proteins in same PDB: d1tuia1, d1tuia3, d1tuib1, d1tuib3, d1tuic1, d1tuic3
    complexed with gdp, mg
  3. Domain d1tuic2: 1tui C:313-405 [25735]
    Other proteins in same PDB: d1tuia1, d1tuia3, d1tuib1, d1tuib3, d1tuic1, d1tuic3
    complexed with gdp, mg

Thermus thermophilus [TaxId:274] [50470] (4 PDB entries)

Domains for 1aip:

Domain d1aipa2: 1aip A:313-405 [25737]
Other proteins in same PDB: d1aipa1, d1aipa3, d1aipb1, d1aipb3, d1aipc1, d1aipc2, d1aipd1, d1aipd2, d1aipe1, d1aipe3, d1aipf1, d1aipf3, d1aipg1, d1aipg2, d1aiph1, d1aiph2

Domain d1aipb2: 1aip B:313-405 [25738]
Other proteins in same PDB: d1aipa1, d1aipa3, d1aipb1, d1aipb3, d1aipc1, d1aipc2, d1aipd1, d1aipd2, d1aipe1, d1aipe3, d1aipf1, d1aipf3, d1aipg1, d1aipg2, d1aiph1, d1aiph2

Domain d1aipe2: 1aip E:313-405 [25739]
Other proteins in same PDB: d1aipa1, d1aipa3, d1aipb1, d1aipb3, d1aipc1, d1aipc2, d1aipd1, d1aipd2, d1aipe1, d1aipe3, d1aipf1, d1aipf3, d1aipg1, d1aipg2, d1aiph1, d1aiph2

Domain d1aipf2: 1aip F:313-405 [25740]
Other proteins in same PDB: d1aipa1, d1aipa3, d1aipb1, d1aipb3, d1aipc1, d1aipc2, d1aipd1, d1aipd2, d1aipe1, d1aipe3, d1aipf1, d1aipf3, d1aipg1, d1aipg2, d1aiph1, d1aiph2

Domain for 1exm:
- Domain d1exma2: 1exm A:313-405 [25736]
  Other proteins in same PDB: d1exma1, d1exma3
  protein/RNA complex; complexed with gnp, mg
Domains for 1ha3:
1. Domain d1ha3a2: 1ha3 A:313-405 [60870]
  Other proteins in same PDB: d1ha3a1, d1ha3a3, d1ha3b1, d1ha3b3
  complexed with bme, gdp, mau, mg
2. Domain d1ha3b2: 1ha3 B:313-405 [60873]
  Other proteins in same PDB: d1ha3a1, d1ha3a3, d1ha3b1, d1ha3b3
  complexed with bme, gdp, mau, mg
Domain for 1zc8:
- Domain d1zc8y2: 1zc8 Y:313-405 [124894]
  Other proteins in same PDB: d1zc8k1, d1zc8y1, d1zc8y3
  automatically matched to d1aipa2
  protein/RNA complex

More info for Protein Elongation factor Tu (EF-Tu) from b.44.1.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain

Timeline for Protein Elongation factor Tu (EF-Tu) from b.44.1.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain:

Protein Elongation factor Tu (EF-Tu) from b.44.1.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain first appeared (with stable ids) in SCOP 1.55, called Protein Elongation factor Tu (EF-Tu) from b.44.1.1: EF-Tu/eEF-1alpha C-terminal domain
Protein Elongation factor Tu (EF-Tu) from b.44.1.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain appears in SCOPe 2.03
Protein Elongation factor Tu (EF-Tu) from b.44.1.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain appears in SCOPe 2.05
Protein Elongation factor Tu (EF-Tu) from b.44.1.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain appears in the current release, SCOPe 2.08