SCOPe 2.02: Protein: Verotoxin-1/shiga-toxin, B-pentamer

Lineage for Protein: Verotoxin-1/shiga-toxin, B-pentamer

Root: SCOPe 2.02
Class b: All beta proteins [48724] (174 folds)
Fold b.40: OB-fold [50198] (16 superfamilies)
barrel, closed or partly opened n=5, S=10 or S=8; greek-key
Superfamily b.40.2: Bacterial enterotoxins [50203] (2 families)
Family b.40.2.1: Bacterial AB5 toxins, B-subunits [50204] (7 proteins)
Protein Verotoxin-1/shiga-toxin, B-pentamer [50210] (4 species)
phage-borne toxin; bacteriophages H30 and H19B

Species:

Enterobacteria phage [TaxId:10730] [187110] (1 PDB entry)
- Domains for 2ga4:
  1. Domain d2ga4b_: 2ga4 B: [134855]
    Other proteins in same PDB: d2ga4a_
    automated match to d1r4pb_
    complexed with 1ps, ade, edo, fmt, na
  2. Domain d2ga4c_: 2ga4 C: [134856]
    Other proteins in same PDB: d2ga4a_
    automated match to d1r4pb_
    complexed with 1ps, ade, edo, fmt, na
  3. Domain d2ga4d_: 2ga4 D: [134857]
    Other proteins in same PDB: d2ga4a_
    automated match to d1r4pb_
    complexed with 1ps, ade, edo, fmt, na
  4. Domain d2ga4e_: 2ga4 E: [134858]
    Other proteins in same PDB: d2ga4a_
    automated match to d1r4pb_
    complexed with 1ps, ade, edo, fmt, na
  5. Domain d2ga4f_: 2ga4 F: [134859]
    Other proteins in same PDB: d2ga4a_
    automated match to d1r4pb_
    complexed with 1ps, ade, edo, fmt, na
Escherichia coli [TaxId:562] [50211] (13 PDB entries)
1. Domains for 1bos:
  1. Domain d1bosa_: 1bos A: [25075]
    complexed with gal
  2. Domain d1bosb_: 1bos B: [25076]
    complexed with gal
  3. Domain d1bosc_: 1bos C: [25077]
    complexed with gal
  4. Domain d1bosd_: 1bos D: [25078]
    complexed with gal
  5. Domain d1bose_: 1bos E: [25079]
    complexed with gal
  6. Domain d1bosf_: 1bos F: [25080]
    complexed with gal
  7. Domain d1bosg_: 1bos G: [25081]
    complexed with gal
  8. Domain d1bosh_: 1bos H: [25082]
    complexed with gal
  9. Domain d1bosi_: 1bos I: [25083]
    complexed with gal
  10. Domain d1bosj_: 1bos J: [25084]
    complexed with gal
  11. Domain d1bosk_: 1bos K: [25085]
    complexed with gal
  12. Domain d1bosl_: 1bos L: [25086]
    complexed with gal
  13. Domain d1bosm_: 1bos M: [25087]
    complexed with gal
  14. Domain d1bosn_: 1bos N: [25088]
    complexed with gal
  15. Domain d1boso_: 1bos O: [25089]
    complexed with gal
  16. Domain d1bosp_: 1bos P: [25090]
    complexed with gal
  17. Domain d1bosq_: 1bos Q: [25091]
    complexed with gal
  18. Domain d1bosr_: 1bos R: [25092]
    complexed with gal
  19. Domain d1boss_: 1bos S: [25093]
    complexed with gal
  20. Domain d1bost_: 1bos T: [25094]
    complexed with gal
2. Domains for 1c48:
  1. Domain d1c48a_: 1c48 A: [25015]
  2. Domain d1c48b_: 1c48 B: [25016]
  3. Domain d1c48c_: 1c48 C: [25017]
  4. Domain d1c48d_: 1c48 D: [25018]
  5. Domain d1c48e_: 1c48 E: [25019]
3. Domains for 1c4q:
  1. Domain d1c4qa_: 1c4q A: [25010]
  2. Domain d1c4qb_: 1c4q B: [25011]
  3. Domain d1c4qc_: 1c4q C: [25012]
  4. Domain d1c4qd_: 1c4q D: [25013]
  5. Domain d1c4qe_: 1c4q E: [25014]
4. Domains for 1cqf:
  1. Domain d1cqfa_: 1cqf A: [25055]
    complex with Gb3 trisaccharide
  2. Domain d1cqfb_: 1cqf B: [25056]
    complex with Gb3 trisaccharide
  3. Domain d1cqfc_: 1cqf C: [25057]
    complex with Gb3 trisaccharide
  4. Domain d1cqfd_: 1cqf D: [25058]
    complex with Gb3 trisaccharide
  5. Domain d1cqfe_: 1cqf E: [25059]
    complex with Gb3 trisaccharide
5. Domains for 1czg:
  1. Domain d1czga_: 1czg A: [25095]
    mutant
  2. Domain d1czgb_: 1czg B: [25096]
    mutant
  3. Domain d1czgc_: 1czg C: [25097]
    mutant
  4. Domain d1czgd_: 1czg D: [25098]
    mutant
  5. Domain d1czge_: 1czg E: [25099]
    mutant
6. Domains for 1czw:
  1. Domain d1czwa_: 1czw A: [25060]
    mutant
  2. Domain d1czwb_: 1czw B: [25061]
    mutant
  3. Domain d1czwc_: 1czw C: [25062]
    mutant
  4. Domain d1czwd_: 1czw D: [25063]
    mutant
  5. Domain d1czwe_: 1czw E: [25064]
    mutant
  6. Domain d1czwf_: 1czw F: [25065]
    mutant
  7. Domain d1czwg_: 1czw G: [25066]
    mutant
  8. Domain d1czwh_: 1czw H: [25067]
    mutant
  9. Domain d1czwi_: 1czw I: [25068]
    mutant
  10. Domain d1czwj_: 1czw J: [25069]
    mutant
7. Domains for 1d1i:
  1. Domain d1d1ia_: 1d1i A: [25020]
  2. Domain d1d1ib_: 1d1i B: [25021]
  3. Domain d1d1ic_: 1d1i C: [25022]
  4. Domain d1d1id_: 1d1i D: [25023]
  5. Domain d1d1ie_: 1d1i E: [25024]
8. Domains for 1d1k:
  1. Domain d1d1ka_: 1d1k A: [25030]
  2. Domain d1d1kb_: 1d1k B: [25031]
  3. Domain d1d1kc_: 1d1k C: [25032]
  4. Domain d1d1kd_: 1d1k D: [25033]
  5. Domain d1d1ke_: 1d1k E: [25034]
9. Domains for 1qoh:
  1. Domain d1qoha_: 1qoh A: [25035]
    A mutant shiga-like toxin IIe
    mutant
  2. Domain d1qohb_: 1qoh B: [25036]
    A mutant shiga-like toxin IIe
    mutant
  3. Domain d1qohc_: 1qoh C: [25037]
    A mutant shiga-like toxin IIe
    mutant
  4. Domain d1qohd_: 1qoh D: [25038]
    A mutant shiga-like toxin IIe
    mutant
  5. Domain d1qohe_: 1qoh E: [25039]
    A mutant shiga-like toxin IIe
    mutant
  6. Domain d1qohf_: 1qoh F: [25040]
    A mutant shiga-like toxin IIe
    mutant
  7. Domain d1qohg_: 1qoh G: [25041]
    A mutant shiga-like toxin IIe
    mutant
  8. Domain d1qohh_: 1qoh H: [25042]
    A mutant shiga-like toxin IIe
    mutant
  9. Domain d1qohi_: 1qoh I: [25043]
    A mutant shiga-like toxin IIe
    mutant
  10. Domain d1qohj_: 1qoh J: [25044]
    A mutant shiga-like toxin IIe
    mutant
  11. Domain d1qohk_: 1qoh K: [25045]
    A mutant shiga-like toxin IIe
    mutant
  12. Domain d1qohl_: 1qoh L: [25046]
    A mutant shiga-like toxin IIe
    mutant
  13. Domain d1qohm_: 1qoh M: [25047]
    A mutant shiga-like toxin IIe
    mutant
  14. Domain d1qohn_: 1qoh N: [25048]
    A mutant shiga-like toxin IIe
    mutant
  15. Domain d1qoho_: 1qoh O: [25049]
    A mutant shiga-like toxin IIe
    mutant
  16. Domain d1qohp_: 1qoh P: [25050]
    A mutant shiga-like toxin IIe
    mutant
  17. Domain d1qohq_: 1qoh Q: [25051]
    A mutant shiga-like toxin IIe
    mutant
  18. Domain d1qohr_: 1qoh R: [25052]
    A mutant shiga-like toxin IIe
    mutant
  19. Domain d1qohs_: 1qoh S: [25053]
    A mutant shiga-like toxin IIe
    mutant
  20. Domain d1qoht_: 1qoh T: [25054]
    A mutant shiga-like toxin IIe
    mutant
10. Domains for 2bos:
  1. Domain d2bosa_: 2bos A: [25025]
    complexed with nbu; mutant
  2. Domain d2bosb_: 2bos B: [25026]
    complexed with nbu; mutant
  3. Domain d2bosc_: 2bos C: [25027]
    complexed with nbu; mutant
  4. Domain d2bosd_: 2bos D: [25028]
    complexed with nbu; mutant
  5. Domain d2bose_: 2bos E: [25029]
    complexed with nbu; mutant
11. Domains for 2c5c:
  1. Domain d2c5ca_: 2c5c A: [129902]
    automated match to d1bosa_
    complexed with gla, s10, so4
  2. Domain d2c5cb_: 2c5c B: [129903]
    automated match to d1bosa_
    complexed with gla, s10, so4
  3. Domain d2c5cc_: 2c5c C: [129904]
    automated match to d1bosa_
    complexed with gla, s10, so4
  4. Domain d2c5cd_: 2c5c D: [129905]
    automated match to d1bosa_
    complexed with gla, s10, so4
  5. Domain d2c5ce_: 2c5c E: [129906]
    automated match to d1bosa_
    complexed with gla, s10, so4
  6. Domain d2c5cf_: 2c5c F: [129907]
    automated match to d1bosa_
    complexed with gla, s10, so4
  7. Domain d2c5cg_: 2c5c G: [129908]
    automated match to d1bosa_
    complexed with gla, s10, so4
  8. Domain d2c5ch_: 2c5c H: [129909]
    automated match to d1bosa_
    complexed with gla, s10, so4
  9. Domain d2c5ci_: 2c5c I: [129910]
    automated match to d1bosa_
    complexed with gla, s10, so4
  10. Domain d2c5cj_: 2c5c J: [129911]
    automated match to d1bosa_
    complexed with gla, s10, so4
12. Domains for 2xsc:
  1. Domain d2xsca_: 2xsc A: [170347]
    automated match to d1bosa_
    complexed with zn
  2. Domain d2xscb_: 2xsc B: [170348]
    automated match to d1bosa_
    complexed with zn
  3. Domain d2xscc_: 2xsc C: [170349]
    automated match to d1bosa_
    complexed with zn
  4. Domain d2xscd_: 2xsc D: [170350]
    automated match to d1bosa_
    complexed with zn
  5. Domain d2xsce_: 2xsc E: [170351]
    automated match to d1bosa_
    complexed with zn
13. Domain for 4ull:
  - Domain d4ulla_: 4ull A: [25100]
Shigella dysenteriae, toxin I [TaxId:622] [50212] (3 PDB entries)
identical sequence with verotoxin-1 B
1. Domains for 1dm0:
  1. Domain d1dm0b_: 1dm0 B: [25106]
    Other proteins in same PDB: d1dm0a_, d1dm0l_
  2. Domain d1dm0c_: 1dm0 C: [25107]
    Other proteins in same PDB: d1dm0a_, d1dm0l_
  3. Domain d1dm0d_: 1dm0 D: [25108]
    Other proteins in same PDB: d1dm0a_, d1dm0l_
  4. Domain d1dm0e_: 1dm0 E: [25109]
    Other proteins in same PDB: d1dm0a_, d1dm0l_
  5. Domain d1dm0f_: 1dm0 F: [25110]
    Other proteins in same PDB: d1dm0a_, d1dm0l_
  6. Domain d1dm0g_: 1dm0 G: [25111]
    Other proteins in same PDB: d1dm0a_, d1dm0l_
  7. Domain d1dm0h_: 1dm0 H: [25112]
    Other proteins in same PDB: d1dm0a_, d1dm0l_
  8. Domain d1dm0i_: 1dm0 I: [25113]
    Other proteins in same PDB: d1dm0a_, d1dm0l_
  9. Domain d1dm0j_: 1dm0 J: [25114]
    Other proteins in same PDB: d1dm0a_, d1dm0l_
  10. Domain d1dm0k_: 1dm0 K: [25115]
    Other proteins in same PDB: d1dm0a_, d1dm0l_
2. Domains for 1qnu:
  1. Domain d1qnua_: 1qnu A: [25101]
    complexed with emb, mec
  2. Domain d1qnub_: 1qnu B: [25102]
    complexed with emb, mec
  3. Domain d1qnuc_: 1qnu C: [25103]
    complexed with emb, mec
  4. Domain d1qnud_: 1qnu D: [25104]
    complexed with emb, mec
  5. Domain d1qnue_: 1qnu E: [25105]
    complexed with emb, mec
3. Domains for 1r4q:
  1. Domain d1r4qb_: 1r4q B: [97032]
    Other proteins in same PDB: d1r4qa_, d1r4ql_
  2. Domain d1r4qc_: 1r4q C: [97033]
    Other proteins in same PDB: d1r4qa_, d1r4ql_
  3. Domain d1r4qd_: 1r4q D: [97034]
    Other proteins in same PDB: d1r4qa_, d1r4ql_
  4. Domain d1r4qe_: 1r4q E: [97035]
    Other proteins in same PDB: d1r4qa_, d1r4ql_
  5. Domain d1r4qf_: 1r4q F: [97036]
    Other proteins in same PDB: d1r4qa_, d1r4ql_
  6. Domain d1r4qg_: 1r4q G: [97037]
    Other proteins in same PDB: d1r4qa_, d1r4ql_
  7. Domain d1r4qh_: 1r4q H: [97038]
    Other proteins in same PDB: d1r4qa_, d1r4ql_
  8. Domain d1r4qi_: 1r4q I: [97039]
    Other proteins in same PDB: d1r4qa_, d1r4ql_
  9. Domain d1r4qj_: 1r4q J: [97040]
    Other proteins in same PDB: d1r4qa_, d1r4ql_
  10. Domain d1r4qk_: 1r4q K: [97041]
    Other proteins in same PDB: d1r4qa_, d1r4ql_
Shigella dysenteriae, toxin II [TaxId:622] [101755] (1 PDB entry)
- Domains for 1r4p:
  1. Domain d1r4pb_: 1r4p B: [97026]
    Other proteins in same PDB: d1r4pa_
    complexed with 1ps, edo, fmt, na
  2. Domain d1r4pc_: 1r4p C: [97027]
    Other proteins in same PDB: d1r4pa_
    complexed with 1ps, edo, fmt, na
  3. Domain d1r4pd_: 1r4p D: [97028]
    Other proteins in same PDB: d1r4pa_
    complexed with 1ps, edo, fmt, na
  4. Domain d1r4pe_: 1r4p E: [97029]
    Other proteins in same PDB: d1r4pa_
    complexed with 1ps, edo, fmt, na
  5. Domain d1r4pf_: 1r4p F: [97030]
    Other proteins in same PDB: d1r4pa_
    complexed with 1ps, edo, fmt, na

More info for Protein Verotoxin-1/shiga-toxin, B-pentamer from b.40.2.1: Bacterial AB5 toxins, B-subunits

Timeline for Protein Verotoxin-1/shiga-toxin, B-pentamer from b.40.2.1: Bacterial AB5 toxins, B-subunits:

Protein Verotoxin-1/shiga-toxin, B-pentamer from b.40.2.1: Bacterial AB5 toxins, B-subunits first appeared (with stable ids) in SCOP 1.55
Protein Verotoxin-1/shiga-toxin, B-pentamer from b.40.2.1: Bacterial AB5 toxins, B-subunits appears in SCOPe 2.01
Protein Verotoxin-1/shiga-toxin, B-pentamer from b.40.2.1: Bacterial AB5 toxins, B-subunits appears in SCOPe 2.03
Protein Verotoxin-1/shiga-toxin, B-pentamer from b.40.2.1: Bacterial AB5 toxins, B-subunits appears in the current release, SCOPe 2.08