SCOPe 2.08: Family b.121.1.1: Glycosyl-asparaginase

Lineage for Family b.121.1.1: Glycosyl-asparaginase

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.1: PHM/PNGase F [49742] (2 families)
   members of this superfamily bind peptide substrates
   duplication: consists of two domains of this fold packed together like the adjacent nucleoplasmin subunits

5. Family b.121.1.1: Glycosyl-asparaginase [49743] (2 proteins)

Proteins:

1. Peptide:N-glycosidase F, PNGase F [49744] (1 species)

   • Species Flavobacterium meningosepticum [TaxId:238] [49745] (3 PDB entries)

2. automated matches [227056] (1 species)
   not a true protein

   • Species Elizabethkingia meningoseptica [TaxId:238] [226062] (1 PDB entry)

More info for Family b.121.1.1: Glycosyl-asparaginase

Timeline for Family b.121.1.1: Glycosyl-asparaginase:

• Family b.121.1.1: Glycosyl-asparaginase first appeared (with stable ids) in SCOP 1.55, called Family b.13.1.1: Glycosyl-asparaginase
  
• Family b.121.1.1: Glycosyl-asparaginase appears in SCOPe 2.07