Lineage for Protein: Rhinovirus coat proteins

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2086376Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2086604Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2086605Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 2086723Protein Rhinovirus coat proteins [49670] (5 species)

Species:

  1. 2086724Human rhinovirus 16, (HRV-16) [TaxId:31708] [49672] (9 PDB entries)
    1. Domains for 1aym:
      1. 2086725Domain d1aym.1: 1aym 4:,2: [83036]
        complexed with dao, myr, zn
      2. 2086726Domain d1aym1_: 1aym 1: [23519]
        complexed with dao, myr, zn
      3. 2086727Domain d1aym3_: 1aym 3: [23521]
        complexed with dao, myr, zn
    2. Domains for 1ayn:
      1. 2086746Domain d1ayn.1: 1ayn 4:,2: [83037]
        complexed with dao, myr, zn
      2. 2086747Domain d1ayn1_: 1ayn 1: [23534]
        complexed with dao, myr, zn
      3. 2086748Domain d1ayn3_: 1ayn 3: [23536]
        complexed with dao, myr, zn
    3. Domains for 1c8m:
      1. 2086740Domain d1c8m.1: 1c8m 4:,2: [83044]
        complexed with w11, zn
      2. 2086741Domain d1c8m1_: 1c8m 1: [23528]
        complexed with w11, zn
      3. 2086742Domain d1c8m3_: 1c8m 3: [23530]
        complexed with w11, zn
    4. Domains for 1ncr:
      1. 2086734Domain d1ncr.1: 1ncr D:,B: [91805]
        complexed with myr, w11, zn
      2. 2086735Domain d1ncra_: 1ncr A: [91806]
        complexed with myr, w11, zn
      3. 2086736Domain d1ncrc_: 1ncr C: [91807]
        complexed with myr, w11, zn
    5. Domains for 1nd2:
      1. 2086728Domain d1nd2.1: 1nd2 D:,B: [91809]
        complexed with myr, zn
      2. 2086729Domain d1nd2a_: 1nd2 A: [91810]
        complexed with myr, zn
      3. 2086730Domain d1nd2c_: 1nd2 C: [91811]
        complexed with myr, zn
    6. Domains for 1nd3:
      1. 2086749Domain d1nd3.1: 1nd3 D:,B: [91812]
        complexed with w11, zn
      2. 2086750Domain d1nd3a_: 1nd3 A: [91813]
        complexed with w11, zn
      3. 2086751Domain d1nd3c_: 1nd3 C: [91814]
        complexed with w11, zn
    7. Domains for 1qju:
      1. 2086731Domain d1qju.1: 1qju 4:,2: [83105]
        protein/RNA complex; complexed with myr, w01, zn
      2. 2086732Domain d1qju1_: 1qju 1: [23522]
        protein/RNA complex; complexed with myr, w01, zn
      3. 2086733Domain d1qju3_: 1qju 3: [23524]
        protein/RNA complex; complexed with myr, w01, zn
    8. Domains for 1qjx:
      1. 2086743Domain d1qjx.1: 1qjx 4:,2: [83106]
        protein/RNA complex; complexed with myr, w02, zn
      2. 2086744Domain d1qjx1_: 1qjx 1: [23531]
        protein/RNA complex; complexed with myr, w02, zn
      3. 2086745Domain d1qjx3_: 1qjx 3: [23533]
        protein/RNA complex; complexed with myr, w02, zn
    9. Domains for 1qjy:
      1. 2086737Domain d1qjy.1: 1qjy 4:,2: [83107]
        protein/RNA complex; complexed with myr, w03, zn
      2. 2086738Domain d1qjy1_: 1qjy 1: [23525]
        protein/RNA complex; complexed with myr, w03, zn
      3. 2086739Domain d1qjy3_: 1qjy 3: [23527]
        protein/RNA complex; complexed with myr, w03, zn
  2. 2086752Human rhinovirus 3, (HRV-3) [TaxId:44130] [49675] (1 PDB entry)
  3. 2086756Human rhinovirus A 1A (HRV-1A) [TaxId:12134] [49673] (4 PDB entries)
    1. Domains for 1r1a:
      1. 2086757Domain d1r1a.1: 1r1a 4:,2: [83111]
        complexed with suc
      2. 2086758Domain d1r1a1_: 1r1a 1: [23537]
        complexed with suc
      3. 2086759Domain d1r1a3_: 1r1a 3: [23539]
        complexed with suc
    2. Domains for 2hwd:
      1. 2086766Domain d2hwd.1: 2hwd 4:,2: [83133]
        complexed with w91
      2. 2086767Domain d2hwd1_: 2hwd 1: [23540]
        complexed with w91
      3. 2086768Domain d2hwd3_: 2hwd 3: [23542]
        complexed with w91
    3. Domains for 2hwe:
      1. 2086760Domain d2hwe.1: 2hwe 4:,2: [83134]
        complexed with w54
      2. 2086761Domain d2hwe1_: 2hwe 1: [23543]
        complexed with w54
      3. 2086762Domain d2hwe3_: 2hwe 3: [23545]
        complexed with w54
    4. Domains for 2hwf:
      1. 2086763Domain d2hwf.1: 2hwf 4:,2: [83135]
        complexed with jen
      2. 2086764Domain d2hwf1_: 2hwf 1: [23546]
        complexed with jen
      3. 2086765Domain d2hwf3_: 2hwf 3: [23548]
        complexed with jen
  4. 2086769Human rhinovirus A 2 (HRV-2) [TaxId:12130] [49674] (2 PDB entries)
    1. Domains for 1fpn:
      1. 2086770Domain d1fpn.1: 1fpn 4:,2: [83053]
        complexed with dao
      2. 2086771Domain d1fpn1_: 1fpn 1: [23549]
        complexed with dao
      3. 2086772Domain d1fpn3_: 1fpn 3: [23551]
        complexed with dao
    2. Domains for 1v9u:
      1. 2086773Domain d1v9u.1: 1v9u 4:,2: [100550]
        Other proteins in same PDB: d1v9u5_
        complexed with ca, dao
      2. 2086774Domain d1v9u1_: 1v9u 1: [100551]
        Other proteins in same PDB: d1v9u5_
        complexed with ca, dao
      3. 2086775Domain d1v9u3_: 1v9u 3: [100552]
        Other proteins in same PDB: d1v9u5_
        complexed with ca, dao
  5. 2086776Human rhinovirus B 14 (HRV-14) [TaxId:12131] [49671] (33 PDB entries)
    1. Domains for 1hri:
      1. 2086864Domain d1hri.1: 1hri 4:,2: [83062]
        complexed with s57
      2. 2086865Domain d1hri1_: 1hri 1: [23474]
        complexed with s57
      3. 2086866Domain d1hri3_: 1hri 3: [23476]
        complexed with s57
    2. Domains for 1hrv:
      1. 2086831Domain d1hrv.1: 1hrv 4:,2: [83063]
        complexed with sdz
      2. 2086832Domain d1hrv1_: 1hrv 1: [23477]
        complexed with sdz
      3. 2086833Domain d1hrv3_: 1hrv 3: [23479]
        complexed with sdz
    3. Domains for 1k5m:
      1. 2086780Domain d1k5m.1: 1k5m D:,B: [83093]
        grafted HIV-1 v3 loop in chain B
        complexed with sph
      2. 2086781Domain d1k5ma_: 1k5m A: [72078]
        grafted HIV-1 v3 loop in chain B
        complexed with sph
      3. 2086782Domain d1k5mc_: 1k5m C: [72080]
        grafted HIV-1 v3 loop in chain B
        complexed with sph
    4. Domains for 1na1:
      1. 2086790Domain d1na1.1: 1na1 D:,B: [91742]
        complexed with w11
      2. 2086791Domain d1na1a_: 1na1 A: [91743]
        complexed with w11
      3. 2086792Domain d1na1c_: 1na1 C: [91744]
        complexed with w11
    5. Domains for 1ncq:
      1. 2086777Domain d1ncq.1: 1ncq D:,B: [91802]
        complexed with w11
      2. 2086778Domain d1ncqa_: 1ncq A: [91803]
        complexed with w11
      3. 2086779Domain d1ncqc_: 1ncq C: [91804]
        complexed with w11
    6. Domains for 1r08:
      1. 2086852Domain d1r08.1: 1r08 4:,2: [83109]
        complexed with w42
      2. 2086853Domain d1r081_: 1r08 1: [23483]
        complexed with w42
      3. 2086854Domain d1r083_: 1r08 3: [23485]
        complexed with w42
    7. Domains for 1r09:
      1. 2086798Domain d1r09.1: 1r09 4:,2: [83110]
        complexed with dms, jen
      2. 2086799Domain d1r091_: 1r09 1: [23441]
        complexed with dms, jen
      3. 2086800Domain d1r093_: 1r09 3: [23443]
        complexed with dms, jen
    8. Domains for 1rmu:
      1. 2086837Domain d1rmu.1: 1rmu 4:,2: [83113]
        complexed with trs; mutant
      2. 2086838Domain d1rmu1_: 1rmu 1: [23504]
        complexed with trs; mutant
      3. 2086839Domain d1rmu3_: 1rmu 3: [23506]
        complexed with trs; mutant
    9. Domains for 1ruc:
      1. 2086867Domain d1ruc.1: 1ruc 4:,2: [83114]
        complexed with w35; mutant
      2. 2086868Domain d1ruc1_: 1ruc 1: [23513]
        complexed with w35; mutant
      3. 2086869Domain d1ruc3_: 1ruc 3: [23515]
        complexed with w35; mutant
    10. Domains for 1rud:
      1. 2086795Domain d1rud.1: 1rud 4:,2: [83115]
        complexed with w84; mutant
      2. 2086796Domain d1rud1_: 1rud 1: [23444]
        complexed with w84; mutant
      3. 2086797Domain d1rud3_: 1rud 3: [23446]
        complexed with w84; mutant
    11. Domains for 1rue:
      1. 2086825Domain d1rue.1: 1rue 4:,2: [83116]
        complexed with w35; mutant
      2. 2086826Domain d1rue1_: 1rue 1: [23468]
        complexed with w35; mutant
      3. 2086827Domain d1rue3_: 1rue 3: [23470]
        complexed with w35; mutant
    12. Domains for 1ruf:
      1. 2086822Domain d1ruf.1: 1ruf 4:,2: [83117]
        mutant
      2. 2086823Domain d1ruf1_: 1ruf 1: [23471]
        mutant
      3. 2086824Domain d1ruf3_: 1ruf 3: [23473]
        mutant
    13. Domains for 1rug:
      1. 2086843Domain d1rug.1: 1rug 4:,2: [83118]
        complexed with w35; mutant
      2. 2086844Domain d1rug1_: 1rug 1: [23495]
        complexed with w35; mutant
      3. 2086845Domain d1rug3_: 1rug 3: [23497]
        complexed with w35; mutant
    14. Domains for 1ruh:
      1. 2086807Domain d1ruh.1: 1ruh 4:,2: [83119]
        complexed with w84; mutant
      2. 2086808Domain d1ruh1_: 1ruh 1: [23459]
        complexed with w84; mutant
      3. 2086809Domain d1ruh3_: 1ruh 3: [23461]
        complexed with w84; mutant
    15. Domains for 1rui:
      1. 2086810Domain d1rui.1: 1rui 4:,2: [83120]
        complexed with w84; mutant
      2. 2086811Domain d1rui1_: 1rui 1: [23462]
        complexed with w84; mutant
      3. 2086812Domain d1rui3_: 1rui 3: [23464]
        complexed with w84; mutant
    16. Domains for 1ruj:
      1. 2086828Domain d1ruj.1: 1ruj 4:,2: [83121]
        mutant
      2. 2086829Domain d1ruj1_: 1ruj 1: [23498]
        mutant
      3. 2086830Domain d1ruj3_: 1ruj 3: [23500]
        mutant
    17. Domains for 1rvf:
      1. 2086870Domain d1rvf.1: 1rvf 4:,2: [83122]
        Other proteins in same PDB: d1rvfh_, d1rvfl_
        protein/RNA complex
      2. 2086871Domain d1rvf1_: 1rvf 1: [23516]
        Other proteins in same PDB: d1rvfh_, d1rvfl_
        protein/RNA complex
      3. 2086872Domain d1rvf3_: 1rvf 3: [23518]
        Other proteins in same PDB: d1rvfh_, d1rvfl_
        protein/RNA complex
    18. Domains for 1vrh:
      1. 2086804Domain d1vrh.1: 1vrh 4:,2: [83130]
        protein/RNA complex; complexed with sd8
      2. 2086805Domain d1vrh1_: 1vrh 1: [23465]
        protein/RNA complex; complexed with sd8
      3. 2086806Domain d1vrh3_: 1vrh 3: [23467]
        protein/RNA complex; complexed with sd8
    19. Domains for 2hwb:
      1. 2086846Domain d2hwb.1: 2hwb 4:,2: [83131]
        complexed with w91
      2. 2086847Domain d2hwb1_: 2hwb 1: [23507]
        complexed with w91
      3. 2086848Domain d2hwb3_: 2hwb 3: [23509]
        complexed with w91
    20. Domains for 2hwc:
      1. 2086840Domain d2hwc.1: 2hwc 4:,2: [83132]
        complexed with w54
      2. 2086841Domain d2hwc1_: 2hwc 1: [23510]
        complexed with w54
      3. 2086842Domain d2hwc3_: 2hwc 3: [23512]
        complexed with w54
    21. Domains for 2r04:
      1. 2086861Domain d2r04.1: 2r04 4:,2: [83138]
        complexed with w71
      2. 2086862Domain d2r041_: 2r04 1: [23486]
        complexed with w71
      3. 2086863Domain d2r043_: 2r04 3: [23488]
        complexed with w71
    22. Domains for 2r06:
      1. 2086855Domain d2r06.1: 2r06 4:,2: [83139]
        complexed with w35
      2. 2086856Domain d2r061_: 2r06 1: [23492]
        complexed with w35
      3. 2086857Domain d2r063_: 2r06 3: [23494]
        complexed with w35
    23. Domains for 2r07:
      1. 2086819Domain d2r07.1: 2r07 4:,2: [83140]
        complexed with w33
      2. 2086820Domain d2r071_: 2r07 1: [23447]
        complexed with w33
      3. 2086821Domain d2r073_: 2r07 3: [23449]
        complexed with w33
    24. Domains for 2rm2:
      1. 2086816Domain d2rm2.1: 2rm2 4:,2: [83141]
        complexed with w43
      2. 2086817Domain d2rm21_: 2rm2 1: [23450]
        complexed with w43
      3. 2086818Domain d2rm23_: 2rm2 3: [23452]
        complexed with w43
    25. Domains for 2rmu:
      1. 2086834Domain d2rmu.1: 2rmu 4:,2: [83142]
        mutant
      2. 2086835Domain d2rmu1_: 2rmu 1: [23501]
        mutant
      3. 2086836Domain d2rmu3_: 2rmu 3: [23503]
        mutant
    26. Domains for 2rr1:
      1. 2086813Domain d2rr1.1: 2rr1 4:,2: [83143]
        complexed with w8r
      2. 2086814Domain d2rr11_: 2rr1 1: [23453]
        complexed with w8r
      3. 2086815Domain d2rr13_: 2rr1 3: [23455]
        complexed with w8r
    27. Domains for 2rs1:
      1. 2086801Domain d2rs1.1: 2rs1 4:,2: [83144]
        complexed with w84
      2. 2086802Domain d2rs11_: 2rs1 1: [23456]
        complexed with w84
      3. 2086803Domain d2rs13_: 2rs1 3: [23458]
        complexed with w84
    28. Domains for 2rs3:
      1. 2086849Domain d2rs3.1: 2rs3 4:,2: [83145]
        complexed with w59
      2. 2086850Domain d2rs31_: 2rs3 1: [23480]
        complexed with w59
      3. 2086851Domain d2rs33_: 2rs3 3: [23482]
        complexed with w59
    29. Domains for 2rs5:
      1. 2086858Domain d2rs5.1: 2rs5 4:,2: [83146]
        complexed with w56
      2. 2086859Domain d2rs51_: 2rs5 1: [23489]
        complexed with w56
      3. 2086860Domain d2rs53_: 2rs5 3: [23491]
        complexed with w56
    30. Domains for 4rhv:
      1. 2086785Domain d4rhv.1: 4rhv 4:,2: [83147]
      2. 2086786Domain d4rhv1_: 4rhv 1: [23438]
      3. 2086787Domain d4rhv3_: 4rhv 3: [23440]
    31. Domains for 5w3e:
      1. 2086788Domain d5w3ea_: 5w3e A: [336698]
        Other proteins in same PDB: d5w3ee_, d5w3eg_
        automated match to d1k5ma_
      2. 2086789Domain d5w3eb_: 5w3e B: [336744]
        Other proteins in same PDB: d5w3ee_, d5w3eg_
        automated match to d1ncqc_
    32. Domains for 5w3l:
      1. 2086793Domain d5w3la_: 5w3l A: [336702]
        Other proteins in same PDB: d5w3le_, d5w3lg_
        automated match to d1k5ma_
      2. 2086794Domain d5w3lb_: 5w3l B: [336722]
        Other proteins in same PDB: d5w3le_, d5w3lg_
        automated match to d1ncqc_
    33. Domains for 5w3m:
      1. 2086783Domain d5w3ma_: 5w3m A: [336723]
        Other proteins in same PDB: d5w3me_, d5w3mg_
        automated match to d1ncqa_
      2. 2086784Domain d5w3mb_: 5w3m B: [336697]
        Other proteins in same PDB: d5w3me_, d5w3mg_
        automated match to d1ncqc_

More info for Protein Rhinovirus coat proteins from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Timeline for Protein Rhinovirus coat proteins from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4):