Lineage for Species: Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2086376Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2087547Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2087548Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)
  6. 2087552Protein Polyomavirus coat proteins [49657] (2 species)
  7. 2087553Species Murine polyomavirus, strain small-plaque 16 [TaxId:10634] [49658] (11 PDB entries)

PDB entries in Species: Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]:

  1. Domain(s) for 1cn3:
    1. 2087594Domain d1cn3a_: 1cn3 A: [23346]
    2. 2087595Domain d1cn3b_: 1cn3 B: [23347]
    3. 2087596Domain d1cn3c_: 1cn3 C: [23348]
    4. 2087597Domain d1cn3d_: 1cn3 D: [23349]
    5. 2087598Domain d1cn3e_: 1cn3 E: [23350]
  2. Domain(s) for 1sid:
    1. 2087599Domain d1sida_: 1sid A: [23351]
    2. 2087600Domain d1sidb_: 1sid B: [23352]
    3. 2087601Domain d1sidc_: 1sid C: [23353]
    4. 2087602Domain d1sidd_: 1sid D: [23354]
    5. 2087603Domain d1side_: 1sid E: [23355]
    6. 2087604Domain d1sidf_: 1sid F: [23356]
  3. Domain(s) for 1sie:
    1. 2087605Domain d1siea_: 1sie A: [23357]
    2. 2087606Domain d1sieb_: 1sie B: [23358]
    3. 2087607Domain d1siec_: 1sie C: [23359]
    4. 2087608Domain d1sied_: 1sie D: [23360]
    5. 2087609Domain d1siee_: 1sie E: [23361]
    6. 2087610Domain d1sief_: 1sie F: [23362]
  4. Domain(s) for 1vpn:
    1. 2087559Domain d1vpna_: 1vpn A: [23341]
    2. 2087560Domain d1vpnb_: 1vpn B: [23342]
    3. 2087561Domain d1vpnc_: 1vpn C: [23343]
    4. 2087562Domain d1vpnd_: 1vpn D: [23344]
    5. 2087563Domain d1vpne_: 1vpn E: [23345]
  5. Domain(s) for 1vps:
    1. 2087554Domain d1vpsa_: 1vps A: [23336]
    2. 2087555Domain d1vpsb_: 1vps B: [23337]
    3. 2087556Domain d1vpsc_: 1vps C: [23338]
    4. 2087557Domain d1vpsd_: 1vps D: [23339]
    5. 2087558Domain d1vpse_: 1vps E: [23340]
  6. Domain(s) for 5cpu:
    1. 2087564Domain d5cpua_: 5cpu A: [278557]
      automated match to d1vpsa_
      complexed with gol
    2. 2087565Domain d5cpub_: 5cpu B: [278559]
      automated match to d1vpsa_
      complexed with gol
    3. 2087566Domain d5cpuc_: 5cpu C: [278558]
      automated match to d1vpsa_
      complexed with gol
    4. 2087567Domain d5cpud_: 5cpu D: [278560]
      automated match to d1vpsa_
      complexed with gol
    5. 2087568Domain d5cpue_: 5cpu E: [278561]
      automated match to d1vpsa_
      complexed with gol
  7. Domain(s) for 5cpw:
    1. 2087574Domain d5cpwa_: 5cpw A: [278563]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia
    2. 2087575Domain d5cpwb_: 5cpw B: [278568]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia
    3. 2087576Domain d5cpwc_: 5cpw C: [278570]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia
    4. 2087577Domain d5cpwd_: 5cpw D: [278569]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia
    5. 2087578Domain d5cpwe_: 5cpw E: [278573]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia
  8. Domain(s) for 5cpx:
    1. 2087579Domain d5cpxa_: 5cpx A: [278578]
      automated match to d1vpsa_
      complexed with gal, gol, nag, sia
    2. 2087580Domain d5cpxb_: 5cpx B: [278575]
      automated match to d1vpsa_
      complexed with gal, gol, nag, sia
    3. 2087581Domain d5cpxc_: 5cpx C: [278579]
      automated match to d1vpsa_
      complexed with gal, gol, nag, sia
    4. 2087582Domain d5cpxd_: 5cpx D: [278576]
      automated match to d1vpsa_
      complexed with gal, gol, nag, sia
    5. 2087583Domain d5cpxe_: 5cpx E: [278580]
      automated match to d1vpsa_
      complexed with gal, gol, nag, sia
  9. Domain(s) for 5cpy:
    1. 2087589Domain d5cpya_: 5cpy A: [278562]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia
    2. 2087590Domain d5cpyb_: 5cpy B: [278564]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia
    3. 2087591Domain d5cpyc_: 5cpy C: [278566]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia
    4. 2087592Domain d5cpyd_: 5cpy D: [278567]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia
    5. 2087593Domain d5cpye_: 5cpy E: [278565]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia
  10. Domain(s) for 5cpz:
    1. 2087569Domain d5cpza_: 5cpz A: [278553]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia, so4
    2. 2087570Domain d5cpzb_: 5cpz B: [278555]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia, so4
    3. 2087571Domain d5cpzc_: 5cpz C: [278552]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia, so4
    4. 2087572Domain d5cpzd_: 5cpz D: [278556]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia, so4
    5. 2087573Domain d5cpze_: 5cpz E: [278554]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia, so4
  11. Domain(s) for 5cq0:
    1. 2087584Domain d5cq0a_: 5cq0 A: [278574]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia, so4
    2. 2087585Domain d5cq0b_: 5cq0 B: [278577]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia, so4
    3. 2087586Domain d5cq0c_: 5cq0 C: [278581]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia, so4
    4. 2087587Domain d5cq0d_: 5cq0 D: [278583]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia, so4
    5. 2087588Domain d5cq0e_: 5cq0 E: [278582]
      automated match to d1vpsa_
      complexed with gal, gol, nga, sia, so4

More info for Species Murine polyomavirus, strain small-plaque 16 [TaxId:10634] from b.121.6.1 Polyomavirus coat proteins

Timeline for Species Murine polyomavirus, strain small-plaque 16 [TaxId:10634] from b.121.6.1 Polyomavirus coat proteins: