Lineage for Protein: Synaptogamin I

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2368400Fold b.7: C2 domain-like [49561] (5 superfamilies)
    sandwich; 8 strands in 2 sheets; greek-key
  4. 2368401Superfamily b.7.1: C2 domain (Calcium/lipid-binding domain, CaLB) [49562] (3 families) (S)
    two constituent families are related by circular permutation
  5. 2368554Family b.7.1.2: Synaptotagmin-like (S variant) [49575] (11 protein domains)
    topologically similar to the C-terminal domain of PapD
  6. 2368580Protein Synaptogamin I [49576] (3 species)
    duplication: contains tandem repeat of two similar domains

Species:

  1. 2368581Human (Homo sapiens) [TaxId:9606] [158946] (10 PDB entries)
    1. Domain for 2k45:
    2. Domain for 2k4a:
    3. Domains for 2k8m:
      1. 2368590Domain d2k8ma1: 2k8m A:3-128 [242415]
        Other proteins in same PDB: d2k8ma2, d2k8mb_, d2k8mc_, d2k8md2
        automated match to d1byna_
      2. 2368591Domain d2k8md1: 2k8m D:3-128 [242418]
        Other proteins in same PDB: d2k8ma2, d2k8mb_, d2k8mc_, d2k8md2
        automated match to d1byna_
    4. Domains for 2ki6:
      1. 2368594Domain d2ki6a_: 2ki6 A: [242524]
        Other proteins in same PDB: d2ki6b_, d2ki6c_, d2ki6d_, d2ki6e_
        automated match to d1byna_
      2. 2368595Domain d2ki6f_: 2ki6 F: [242529]
        Other proteins in same PDB: d2ki6b_, d2ki6c_, d2ki6d_, d2ki6e_
        automated match to d1byna_
    5. Domain for 2lha:
    6. Domains for 2r83:
      1. 2368586Domain d2r83a1: 2r83 A:268-418 [151670]
        automated match to d1dqva2
        complexed with cl
      2. 2368587Domain d2r83a2: 2r83 A:140-267 [238850]
        automated match to d1dqva1
        complexed with cl
      3. 2368588Domain d2r83b1: 2r83 B:268-418 [151671]
        automated match to d1dqva2
        complexed with cl
      4. 2368589Domain d2r83b2: 2r83 B:140-267 [238851]
        automated match to d1dqva1
        complexed with cl
    7. Domain for 3f00:
    8. Domain for 3f01:
    9. Domain for 3f04:
    10. Domain for 3f05:
  2. 2368597Mouse (Mus musculus) [TaxId:10090] [335436] (5 PDB entries)
    1. Domain for 5t0r:
    2. Domain for 5t0s:
    3. Domains for 5vfe:
      1. 3050890Domain d5vfeb_: 5vfe B: [350952]
        automated match to d2k45a_
        complexed with pb, so4
      2. 3050892Domain d5vfea_: 5vfe A: [350954]
        automated match to d2k45a_
        complexed with pb, so4
    4. Domain for 5vff:
    5. Domain for 5vfg:
  3. 2368600Norway rat (Rattus norvegicus) [TaxId:10116] [49577] (11 PDB entries)
    Uniprot P21707 271-419 ! Uniprot P21707 271-419
    1. Domain for 1byn:
    2. Domain for 1k5w:
    3. Domain for 1rsy:
    4. Domain for 1tjm:
    5. Domain for 1tjx:
    6. Domain for 1uov:
    7. Domain for 1uow:
    8. Domain for 4wee:
    9. Domains for 5ccj:
      1. 2368607Domain d5ccja_: 5ccj A: [275846]
        Other proteins in same PDB: d5ccjd2
        automated match to d2lhaa_
        complexed with gol, so4; mutant
      2. 2368608Domain d5ccjb_: 5ccj B: [275847]
        Other proteins in same PDB: d5ccjd2
        automated match to d2lhaa_
        complexed with gol, so4; mutant
      3. 2368609Domain d5ccjc_: 5ccj C: [275848]
        Other proteins in same PDB: d5ccjd2
        automated match to d2lhaa_
        complexed with gol, so4; mutant
      4. 2368610Domain d5ccjd1: 5ccj D:271-421 [275849]
        Other proteins in same PDB: d5ccjd2
        automated match to d2lhaa_
        complexed with gol, so4; mutant
    10. Domains for 5w5c:
      1. 2368611Domain d5w5cf1: 5w5c F:143-267 [338393]
        Other proteins in same PDB: d5w5cb_, d5w5cc_, d5w5cd_
        automated match to d2r83a2
        complexed with gol, mg
      2. 2368612Domain d5w5cf2: 5w5c F:268-418 [338394]
        Other proteins in same PDB: d5w5cb_, d5w5cc_, d5w5cd_
        automated match to d2r83a1
        complexed with gol, mg
    11. Domain for 5w5d:

More info for Protein Synaptogamin I from b.7.1.2: Synaptotagmin-like (S variant)

Timeline for Protein Synaptogamin I from b.7.1.2: Synaptotagmin-like (S variant):