SCOPe 2.07: Species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

Lineage for Species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds)
Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
sandwich; 7 strands in 2 sheets, greek-key
variations: some members have additional 1-2 strands
Superfamily b.6.1: Cupredoxins [49503] (8 families)
contains copper-binding site
Family b.6.1.3: Multidomain cupredoxins [49550] (8 proteins)
Protein Nitrite reductase, NIR [49551] (5 species)
consists of two domains of this fold
Species Alcaligenes faecalis, strain s-6 [TaxId:511] [49553] (31 PDB entries)
Uniprot P38501

PDB entries in Species: Alcaligenes faecalis, strain s-6 [TaxId: 511]:

Domain(s) for 1aq8:
1. Domain d1aq8a1: 1aq8 A:9-166 [23096]
  complexed with cu
2. Domain d1aq8a2: 1aq8 A:167-339 [23097]
  complexed with cu
3. Domain d1aq8b1: 1aq8 B:9-166 [23098]
  complexed with cu
4. Domain d1aq8b2: 1aq8 B:167-339 [23099]
  complexed with cu
5. Domain d1aq8c1: 1aq8 C:9-166 [23100]
  complexed with cu
6. Domain d1aq8c2: 1aq8 C:167-339 [23101]
  complexed with cu
Domain(s) for 1as6:
1. Domain d1as6a1: 1as6 A:5-166 [23090]
  complexed with cu, no2
2. Domain d1as6a2: 1as6 A:167-339 [23091]
  complexed with cu, no2
3. Domain d1as6b1: 1as6 B:4-166 [23092]
  complexed with cu, no2
4. Domain d1as6b2: 1as6 B:167-339 [23093]
  complexed with cu, no2
5. Domain d1as6c1: 1as6 C:5-166 [23094]
  complexed with cu, no2
6. Domain d1as6c2: 1as6 C:167-339 [23095]
  complexed with cu, no2
Domain(s) for 1as7:
1. Domain d1as7a1: 1as7 A:4-166 [23102]
  complexed with cu
2. Domain d1as7a2: 1as7 A:167-340 [23103]
  complexed with cu
3. Domain d1as7b1: 1as7 B:4-166 [23104]
  complexed with cu
4. Domain d1as7b2: 1as7 B:167-340 [23105]
  complexed with cu
5. Domain d1as7c1: 1as7 C:4-166 [23106]
  complexed with cu
6. Domain d1as7c2: 1as7 C:167-340 [23107]
  complexed with cu
Domain(s) for 1as8:
1. Domain d1as8a1: 1as8 A:4-166 [23074]
  complexed with cu, no2
2. Domain d1as8a2: 1as8 A:167-339 [23075]
  complexed with cu, no2
3. Domain d1as8b1: 1as8 B:4-166 [23076]
  complexed with cu, no2
4. Domain d1as8b2: 1as8 B:167-339 [23077]
  complexed with cu, no2
5. Domain d1as8c1: 1as8 C:4-166 [23078]
  complexed with cu, no2
6. Domain d1as8c2: 1as8 C:167-339 [23079]
  complexed with cu, no2
Domain(s) for 1et5:
1. Domain d1et5a1: 1et5 A:4-166 [23080]
  complexed with cu, zn; mutant
2. Domain d1et5a2: 1et5 A:167-339 [23081]
  complexed with cu, zn; mutant
Domain(s) for 1et7:
1. Domain d1et7a1: 1et7 A:4-166 [23070]
  Other proteins in same PDB: d1et7a3
  complexed with cd, cu; mutant
2. Domain d1et7a2: 1et7 A:167-340 [23071]
  Other proteins in same PDB: d1et7a3
  complexed with cd, cu; mutant
Domain(s) for 1et8:
1. Domain d1et8a1: 1et8 A:4-166 [23072]
  Other proteins in same PDB: d1et8a3
  complexed with cu, zn; mutant
2. Domain d1et8a2: 1et8 A:167-340 [23073]
  Other proteins in same PDB: d1et8a3
  complexed with cu, zn; mutant
Domain(s) for 1j9q:
1. Domain d1j9qa1: 1j9q A:4-166 [62765]
  complexed with cu, no2
2. Domain d1j9qa2: 1j9q A:167-339 [62766]
  complexed with cu, no2
3. Domain d1j9qb1: 1j9q B:4-166 [62767]
  complexed with cu, no2
4. Domain d1j9qb2: 1j9q B:167-339 [62768]
  complexed with cu, no2
5. Domain d1j9qc1: 1j9q C:4-166 [62769]
  complexed with cu, no2
6. Domain d1j9qc2: 1j9q C:167-339 [62770]
  complexed with cu, no2
Domain(s) for 1j9r:
1. Domain d1j9ra1: 1j9r A:4-166 [62771]
  complexed with cu, no2
2. Domain d1j9ra2: 1j9r A:167-339 [62772]
  complexed with cu, no2
3. Domain d1j9rb1: 1j9r B:4-166 [62773]
  complexed with cu, no2
4. Domain d1j9rb2: 1j9r B:167-339 [62774]
  complexed with cu, no2
5. Domain d1j9rc1: 1j9r C:4-166 [62775]
  complexed with cu, no2
6. Domain d1j9rc2: 1j9r C:167-339 [62776]
  complexed with cu, no2
Domain(s) for 1j9s:
1. Domain d1j9sa1: 1j9s A:4-166 [62777]
  complexed with cu, no2
2. Domain d1j9sa2: 1j9s A:167-339 [62778]
  complexed with cu, no2
3. Domain d1j9sb1: 1j9s B:4-166 [62779]
  complexed with cu, no2
4. Domain d1j9sb2: 1j9s B:167-339 [62780]
  complexed with cu, no2
5. Domain d1j9sc1: 1j9s C:4-166 [62781]
  complexed with cu, no2
6. Domain d1j9sc2: 1j9s C:167-339 [62782]
  complexed with cu, no2
Domain(s) for 1j9t:
1. Domain d1j9ta1: 1j9t A:4-166 [62783]
  complexed with cu, no2
2. Domain d1j9ta2: 1j9t A:167-339 [62784]
  complexed with cu, no2
3. Domain d1j9tb1: 1j9t B:4-166 [62785]
  complexed with cu, no2
4. Domain d1j9tb2: 1j9t B:167-339 [62786]
  complexed with cu, no2
5. Domain d1j9tc1: 1j9t C:4-166 [62787]
  complexed with cu, no2
6. Domain d1j9tc2: 1j9t C:167-339 [62788]
  complexed with cu, no2
Domain(s) for 1l9o:
1. Domain d1l9oa1: 1l9o A:4-166 [77828]
  complexed with cu, no2
2. Domain d1l9oa2: 1l9o A:167-339 [77829]
  complexed with cu, no2
3. Domain d1l9ob1: 1l9o B:4-166 [77830]
  complexed with cu, no2
4. Domain d1l9ob2: 1l9o B:167-339 [77831]
  complexed with cu, no2
5. Domain d1l9oc1: 1l9o C:4-166 [77832]
  complexed with cu, no2
6. Domain d1l9oc2: 1l9o C:167-339 [77833]
  complexed with cu, no2
Domain(s) for 1l9p:
1. Domain d1l9pa1: 1l9p A:4-166 [77834]
  complexed with cu, no2
2. Domain d1l9pa2: 1l9p A:167-339 [77835]
  complexed with cu, no2
3. Domain d1l9pb1: 1l9p B:4-166 [77836]
  complexed with cu, no2
4. Domain d1l9pb2: 1l9p B:167-339 [77837]
  complexed with cu, no2
5. Domain d1l9pc1: 1l9p C:4-166 [77838]
  complexed with cu, no2
6. Domain d1l9pc2: 1l9p C:167-339 [77839]
  complexed with cu, no2
Domain(s) for 1l9q:
1. Domain d1l9qa1: 1l9q A:4-166 [77840]
  complexed with cu, no2
2. Domain d1l9qa2: 1l9q A:167-339 [77841]
  complexed with cu, no2
3. Domain d1l9qb1: 1l9q B:4-166 [77842]
  complexed with cu, no2
4. Domain d1l9qb2: 1l9q B:167-339 [77843]
  complexed with cu, no2
5. Domain d1l9qc1: 1l9q C:4-166 [77844]
  complexed with cu, no2
6. Domain d1l9qc2: 1l9q C:167-339 [77845]
  complexed with cu, no2
Domain(s) for 1l9r:
1. Domain d1l9ra1: 1l9r A:4-166 [77846]
  complexed with cu, no2
2. Domain d1l9ra2: 1l9r A:167-339 [77847]
  complexed with cu, no2
3. Domain d1l9rb1: 1l9r B:4-166 [77848]
  complexed with cu, no2
4. Domain d1l9rb2: 1l9r B:167-339 [77849]
  complexed with cu, no2
5. Domain d1l9rc1: 1l9r C:4-166 [77850]
  complexed with cu, no2
6. Domain d1l9rc2: 1l9r C:167-339 [77851]
  complexed with cu, no2
Domain(s) for 1l9s:
1. Domain d1l9sa1: 1l9s A:4-166 [77852]
  complexed with cu, no2
2. Domain d1l9sa2: 1l9s A:167-339 [77853]
  complexed with cu, no2
3. Domain d1l9sb1: 1l9s B:4-166 [77854]
  complexed with cu, no2
4. Domain d1l9sb2: 1l9s B:167-339 [77855]
  complexed with cu, no2
5. Domain d1l9sc1: 1l9s C:4-166 [77856]
  complexed with cu, no2
6. Domain d1l9sc2: 1l9s C:167-339 [77857]
  complexed with cu, no2
Domain(s) for 1l9t:
1. Domain d1l9ta1: 1l9t A:4-166 [77858]
  complexed with cu, no2
2. Domain d1l9ta2: 1l9t A:167-339 [77859]
  complexed with cu, no2
3. Domain d1l9tb1: 1l9t B:4-166 [77860]
  complexed with cu, no2
4. Domain d1l9tb2: 1l9t B:167-339 [77861]
  complexed with cu, no2
5. Domain d1l9tc1: 1l9t C:4-166 [77862]
  complexed with cu, no2
6. Domain d1l9tc2: 1l9t C:167-339 [77863]
  complexed with cu, no2
Domain(s) for 1npj:
1. Domain d1npja1: 1npj A:4-166 [85959]
  complexed with cu; mutant
2. Domain d1npja2: 1npj A:167-339 [85960]
  complexed with cu; mutant
3. Domain d1npjb1: 1npj B:4-166 [85961]
  complexed with cu; mutant
4. Domain d1npjb2: 1npj B:167-339 [85962]
  complexed with cu; mutant
5. Domain d1npjc1: 1npj C:4-166 [85963]
  complexed with cu; mutant
6. Domain d1npjc2: 1npj C:167-339 [85964]
  complexed with cu; mutant
Domain(s) for 1npn:
1. Domain d1npna1: 1npn A:4-166 [85965]
  complexed with cl, cu; mutant
2. Domain d1npna2: 1npn A:167-339 [85966]
  complexed with cl, cu; mutant
3. Domain d1npnb1: 1npn B:4-166 [85967]
  complexed with cl, cu; mutant
4. Domain d1npnb2: 1npn B:167-339 [85968]
  complexed with cl, cu; mutant
5. Domain d1npnc1: 1npn C:4-166 [85969]
  complexed with cl, cu; mutant
6. Domain d1npnc2: 1npn C:167-339 [85970]
  complexed with cl, cu; mutant
Domain(s) for 1ntd:
1. Domain d1ntda1: 1ntd A:5-166 [23088]
  complexed with cu; mutant
2. Domain d1ntda2: 1ntd A:167-340 [23089]
  complexed with cu; mutant
Domain(s) for 1sjm:
1. Domain d1sjma1: 1sjm A:5-166 [105654]
  complexed with act, cu, no2, trs
2. Domain d1sjma2: 1sjm A:167-339 [105655]
  complexed with act, cu, no2, trs
3. Domain d1sjmb1: 1sjm B:5-166 [105656]
  complexed with act, cu, no2, trs
4. Domain d1sjmb2: 1sjm B:167-339 [105657]
  complexed with act, cu, no2, trs
5. Domain d1sjmc1: 1sjm C:5-166 [105658]
  complexed with act, cu, no2, trs
6. Domain d1sjmc2: 1sjm C:167-339 [105659]
  complexed with act, cu, no2, trs
Domain(s) for 1snr:
1. Domain d1snra1: 1snr A:5-166 [105823]
  complexed with act, cu, cu1, no, trs
2. Domain d1snra2: 1snr A:167-339 [105824]
  complexed with act, cu, cu1, no, trs
3. Domain d1snrb1: 1snr B:5-166 [105825]
  complexed with act, cu, cu1, no, trs
4. Domain d1snrb2: 1snr B:167-339 [105826]
  complexed with act, cu, cu1, no, trs
5. Domain d1snrc1: 1snr C:5-166 [105827]
  complexed with act, cu, cu1, no, trs
6. Domain d1snrc2: 1snr C:167-339 [105828]
  complexed with act, cu, cu1, no, trs
Domain(s) for 2afn:
1. Domain d2afna1: 2afn A:9-166 [23082]
  complexed with cu; mutant
2. Domain d2afna2: 2afn A:167-339 [23083]
  complexed with cu; mutant
3. Domain d2afnb1: 2afn B:9-166 [23084]
  complexed with cu; mutant
4. Domain d2afnb2: 2afn B:167-339 [23085]
  complexed with cu; mutant
5. Domain d2afnc1: 2afn C:9-166 [23086]
  complexed with cu; mutant
6. Domain d2afnc2: 2afn C:167-339 [23087]
  complexed with cu; mutant
Domain(s) for 2pp7:
1. Domain d2pp7a1: 2pp7 A:4-166 [149729]
  automated match to d1snra1
  complexed with act, cu, cu1, trs
2. Domain d2pp7a2: 2pp7 A:167-339 [149730]
  automated match to d1snra2
  complexed with act, cu, cu1, trs
3. Domain d2pp7b1: 2pp7 B:4-166 [149731]
  automated match to d1snra1
  complexed with act, cu, cu1, trs
4. Domain d2pp7b2: 2pp7 B:167-340 [149732]
  automated match to d1snra2
  complexed with act, cu, cu1, trs
5. Domain d2pp7c1: 2pp7 C:4-166 [149733]
  automated match to d1snra1
  complexed with act, cu, cu1, trs
6. Domain d2pp7c2: 2pp7 C:167-339 [149734]
  automated match to d1snra2
  complexed with act, cu, cu1, trs
Domain(s) for 2pp8:
1. Domain d2pp8a1: 2pp8 A:4-166 [149735]
  automated match to d1snra1
  complexed with act, cu, cu1, fmt, trs
2. Domain d2pp8a2: 2pp8 A:167-339 [149736]
  automated match to d1snra2
  complexed with act, cu, cu1, fmt, trs
3. Domain d2pp8b1: 2pp8 B:4-166 [149737]
  automated match to d1snra1
  complexed with act, cu, cu1, fmt, trs
4. Domain d2pp8b2: 2pp8 B:167-339 [149738]
  automated match to d1snra2
  complexed with act, cu, cu1, fmt, trs
5. Domain d2pp8c1: 2pp8 C:4-166 [149739]
  automated match to d1snra1
  complexed with act, cu, cu1, fmt, trs
6. Domain d2pp8c2: 2pp8 C:167-339 [149740]
  automated match to d1snra2
  complexed with act, cu, cu1, fmt, trs
Domain(s) for 2pp9:
1. Domain d2pp9a1: 2pp9 A:4-166 [149741]
  automated match to d1snra1
  complexed with act, cu, cu1, no3, trs
2. Domain d2pp9a2: 2pp9 A:167-339 [149742]
  automated match to d1snra2
  complexed with act, cu, cu1, no3, trs
3. Domain d2pp9b1: 2pp9 B:4-166 [149743]
  automated match to d1snra1
  complexed with act, cu, cu1, no3, trs
4. Domain d2pp9b2: 2pp9 B:167-340 [149744]
  automated match to d1snra2
  complexed with act, cu, cu1, no3, trs
5. Domain d2pp9c1: 2pp9 C:4-166 [149745]
  automated match to d1snra1
  complexed with act, cu, cu1, no3, trs
6. Domain d2pp9c2: 2pp9 C:167-339 [149746]
  automated match to d1snra2
  complexed with act, cu, cu1, no3, trs
Domain(s) for 2ppa:
1. Domain d2ppaa1: 2ppa A:4-166 [149747]
  automated match to d1snra1
  complexed with act, cu, cu1, n2o, trs
2. Domain d2ppaa2: 2ppa A:167-339 [149748]
  automated match to d1snra2
  complexed with act, cu, cu1, n2o, trs
3. Domain d2ppab1: 2ppa B:4-166 [149749]
  automated match to d1snra1
  complexed with act, cu, cu1, n2o, trs
4. Domain d2ppab2: 2ppa B:167-340 [149750]
  automated match to d1snra2
  complexed with act, cu, cu1, n2o, trs
5. Domain d2ppac1: 2ppa C:4-166 [149751]
  automated match to d1snra1
  complexed with act, cu, cu1, n2o, trs
6. Domain d2ppac2: 2ppa C:167-339 [149752]
  automated match to d1snra2
  complexed with act, cu, cu1, n2o, trs
Domain(s) for 2ppc:
1. Domain d2ppca1: 2ppc A:4-166 [149757]
  automated match to d1snra1
  complexed with act, cu, cu1, no2, trs
2. Domain d2ppca2: 2ppc A:167-339 [149758]
  automated match to d1snra2
  complexed with act, cu, cu1, no2, trs
3. Domain d2ppcb1: 2ppc B:4-166 [149759]
  automated match to d1snra1
  complexed with act, cu, cu1, no2, trs
4. Domain d2ppcb2: 2ppc B:167-340 [149760]
  automated match to d1snra2
  complexed with act, cu, cu1, no2, trs
5. Domain d2ppcc1: 2ppc C:4-166 [149761]
  automated match to d1snra1
  complexed with act, cu, cu1, no2, trs
6. Domain d2ppcc2: 2ppc C:167-339 [149762]
  automated match to d1snra2
  complexed with act, cu, cu1, no2, trs
Domain(s) for 2ppd:
1. Domain d2ppda1: 2ppd A:4-166 [149763]
  automated match to d1npna1
  complexed with act, cu, cu1, no, trs; mutant
2. Domain d2ppda2: 2ppd A:167-339 [149764]
  automated match to d1npna2
  complexed with act, cu, cu1, no, trs; mutant
3. Domain d2ppdb1: 2ppd B:4-166 [149765]
  automated match to d1npna1
  complexed with act, cu, cu1, no, trs; mutant
4. Domain d2ppdb2: 2ppd B:167-340 [149766]
  automated match to d1npna2
  complexed with act, cu, cu1, no, trs; mutant
5. Domain d2ppdc1: 2ppd C:4-166 [149767]
  automated match to d1npna1
  complexed with act, cu, cu1, no, trs; mutant
6. Domain d2ppdc2: 2ppd C:167-339 [149768]
  automated match to d1npna2
  complexed with act, cu, cu1, no, trs; mutant
Domain(s) for 2ppe:
1. Domain d2ppea1: 2ppe A:4-166 [149769]
  automated match to d1npna1
  complexed with act, cu, cu1, no, trs; mutant
2. Domain d2ppea2: 2ppe A:167-339 [149770]
  automated match to d1npna2
  complexed with act, cu, cu1, no, trs; mutant
3. Domain d2ppeb1: 2ppe B:4-166 [149771]
  automated match to d1npna1
  complexed with act, cu, cu1, no, trs; mutant
4. Domain d2ppeb2: 2ppe B:167-340 [149772]
  automated match to d1npna2
  complexed with act, cu, cu1, no, trs; mutant
5. Domain d2ppec1: 2ppe C:4-166 [149773]
  automated match to d1npna1
  complexed with act, cu, cu1, no, trs; mutant
6. Domain d2ppec2: 2ppe C:167-339 [149774]
  automated match to d1npna2
  complexed with act, cu, cu1, no, trs; mutant
Domain(s) for 2ppf:
1. Domain d2ppfa1: 2ppf A:4-166 [149775]
  automated match to d1j9qa1
  complexed with act, cu, cu1, no, trs; mutant
2. Domain d2ppfa2: 2ppf A:167-339 [149776]
  automated match to d1j9qa2
  complexed with act, cu, cu1, no, trs; mutant
3. Domain d2ppfb1: 2ppf B:4-166 [149777]
  automated match to d1j9qa1
  complexed with act, cu, cu1, no, trs; mutant
4. Domain d2ppfb2: 2ppf B:167-340 [149778]
  automated match to d1j9qa2
  complexed with act, cu, cu1, no, trs; mutant
5. Domain d2ppfc1: 2ppf C:4-166 [149779]
  automated match to d1j9qa1
  complexed with act, cu, cu1, no, trs; mutant
6. Domain d2ppfc2: 2ppf C:167-339 [149780]
  automated match to d1j9qa2
  complexed with act, cu, cu1, no, trs; mutant

More info for Species Alcaligenes faecalis, strain s-6 [TaxId:511] from b.6.1.3 Nitrite reductase, NIR

Timeline for Species Alcaligenes faecalis, strain s-6 [TaxId:511] from b.6.1.3 Nitrite reductase, NIR:

Species Alcaligenes faecalis, strain s-6 [TaxId:511] from b.6.1.3 Nitrite reductase, NIR first appeared (with stable ids) in SCOP 1.55
Species Alcaligenes faecalis, strain s-6 [TaxId:511] from b.6.1.3 Nitrite reductase, NIR appears in SCOPe 2.06
Species Alcaligenes faecalis, strain s-6 [TaxId:511] from b.6.1.3 Nitrite reductase, NIR does not appear in SCOPe 2.08