Lineage for Protein: Nitrite reductase, NIR

  1. Root: SCOP 1.71
  2. 546417Class b: All beta proteins [48724] (149 folds)
  3. 553581Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands
  4. 553582Superfamily b.6.1: Cupredoxins [49503] (6 families) (S)
    contains copper-binding site
  5. 553929Family b.6.1.3: Multidomain cupredoxins [49550] (7 proteins)
  6. 554017Protein Nitrite reductase, NIR [49551] (5 species)
    consists of two domains of this fold

Species:

  1. 554018Achromobacter cycloclastes [TaxId:223] [49552] (10 PDB entries)
    1. Domains for 1kcb:
      1. 554021Domain d1kcba1: 1kcb A:8-166 [90951]
      2. 554022Domain d1kcba2: 1kcb A:167-340 [90952]
        complexed with cu; mutant
    2. Domains for 1nia:
      1. 554043Domain d1niaa1: 1nia A:8-166 [23058]
      2. 554044Domain d1niaa2: 1nia A:167-340 [23059]
      3. 554045Domain d1niab1: 1nia B:8-166 [23060]
      4. 554046Domain d1niab2: 1nia B:167-340 [23061]
      5. 554047Domain d1niac1: 1nia C:8-166 [23062]
      6. 554048Domain d1niac2: 1nia C:167-340 [23063]
        complexed with cu, dis, mto
    3. Domains for 1nib:
      1. 554049Domain d1niba1: 1nib A:8-166 [23064]
      2. 554050Domain d1niba2: 1nib A:167-340 [23065]
      3. 554051Domain d1nibb1: 1nib B:8-166 [23066]
      4. 554052Domain d1nibb2: 1nib B:167-340 [23067]
      5. 554053Domain d1nibc1: 1nib C:8-166 [23068]
      6. 554054Domain d1nibc2: 1nib C:167-340 [23069]
        complexed with cu, dis, mto
    4. Domains for 1nic:
      1. 554029Domain d1nic_1: 1nic 8-166 [23050]
      2. 554030Domain d1nic_2: 1nic 167-340 [23051]
        complexed with cu, dis, mto, so4
    5. Domains for 1nid:
      1. 554035Domain d1nid_1: 1nid 8-166 [23054]
      2. 554036Domain d1nid_2: 1nid 167-340 [23055]
        complexed with cu, no2
    6. Domains for 1nie:
      1. 554031Domain d1nie_1: 1nie 8-166 [23052]
      2. 554032Domain d1nie_2: 1nie 167-340 [23053]
        complexed with cu, dis, mto
    7. Domains for 1nif:
      1. 554019Domain d1nif_1: 1nif 8-166 [23048]
      2. 554020Domain d1nif_2: 1nif 167-340 [23049]
        complexed with cu, dis, mto
    8. Domains for 1rzp:
      1. 554023Domain d1rzpa1: 1rzp A:8-166 [98212]
      2. 554024Domain d1rzpa2: 1rzp A:167-335 [98213]
      3. 554025Domain d1rzpb1: 1rzp B:8-166 [98214]
      4. 554026Domain d1rzpb2: 1rzp B:167-335 [98215]
      5. 554027Domain d1rzpc1: 1rzp C:4-166 [98216]
      6. 554028Domain d1rzpc2: 1rzp C:167-335 [98217]
        complexed with cu, mes, so4
    9. Domains for 1rzq:
      1. 554037Domain d1rzqa1: 1rzq A:8-166 [98218]
      2. 554038Domain d1rzqa2: 1rzq A:167-335 [98219]
      3. 554039Domain d1rzqb1: 1rzq B:8-166 [98220]
      4. 554040Domain d1rzqb2: 1rzq B:167-335 [98221]
      5. 554041Domain d1rzqc1: 1rzq C:4-166 [98222]
      6. 554042Domain d1rzqc2: 1rzq C:167-335 [98223]
        complexed with acy, cu, so4
    10. Domains for 2nrd:
      1. 554033Domain d2nrd_1: 2nrd 8-166 [23056]
      2. 554034Domain d2nrd_2: 2nrd 167-340 [23057]
        complexed with cu, dis, mto
  2. 554055Alcaligenes faecalis, strain s-6 [TaxId:511] [49553] (23 PDB entries)
    1. Domains for 1aq8:
      1. 554160Domain d1aq8a1: 1aq8 A:9-166 [23096]
      2. 554161Domain d1aq8a2: 1aq8 A:167-339 [23097]
      3. 554162Domain d1aq8b1: 1aq8 B:9-166 [23098]
      4. 554163Domain d1aq8b2: 1aq8 B:167-339 [23099]
      5. 554164Domain d1aq8c1: 1aq8 C:9-166 [23100]
      6. 554165Domain d1aq8c2: 1aq8 C:167-339 [23101]
        complexed with cu
    2. Domains for 1as6:
      1. 554152Domain d1as6a1: 1as6 A:5-166 [23090]
      2. 554153Domain d1as6a2: 1as6 A:167-339 [23091]
      3. 554154Domain d1as6b1: 1as6 B:4-166 [23092]
      4. 554155Domain d1as6b2: 1as6 B:167-339 [23093]
      5. 554156Domain d1as6c1: 1as6 C:5-166 [23094]
      6. 554157Domain d1as6c2: 1as6 C:167-339 [23095]
        complexed with cu, no2
    3. Domains for 1as7:
      1. 554172Domain d1as7a1: 1as7 A:4-166 [23102]
      2. 554173Domain d1as7a2: 1as7 A:167-340 [23103]
      3. 554174Domain d1as7b1: 1as7 B:4-166 [23104]
      4. 554175Domain d1as7b2: 1as7 B:167-340 [23105]
      5. 554176Domain d1as7c1: 1as7 C:4-166 [23106]
      6. 554177Domain d1as7c2: 1as7 C:167-340 [23107]
        complexed with cu
    4. Domains for 1as8:
      1. 554126Domain d1as8a1: 1as8 A:4-166 [23074]
      2. 554127Domain d1as8a2: 1as8 A:167-339 [23075]
      3. 554128Domain d1as8b1: 1as8 B:4-166 [23076]
      4. 554129Domain d1as8b2: 1as8 B:167-339 [23077]
      5. 554130Domain d1as8c1: 1as8 C:4-166 [23078]
      6. 554131Domain d1as8c2: 1as8 C:167-339 [23079]
        complexed with cu, no2
    5. Domains for 1et5:
      1. 554138Domain d1et5a1: 1et5 A:4-166 [23080]
      2. 554139Domain d1et5a2: 1et5 A:167-339 [23081]
        complexed with cu, zn; mutant
    6. Domains for 1et7:
      1. 554104Domain d1et7a1: 1et7 A:4-166 [23070]
      2. 554105Domain d1et7a2: 1et7 A:167-342 [23071]
        complexed with cd, cu; mutant
    7. Domains for 1et8:
      1. 554118Domain d1et8a1: 1et8 A:4-166 [23072]
      2. 554119Domain d1et8a2: 1et8 A:167-342 [23073]
        complexed with cu, zn; mutant
    8. Domains for 1j9q:
      1. 554068Domain d1j9qa1: 1j9q A:4-166 [62765]
      2. 554069Domain d1j9qa2: 1j9q A:167-339 [62766]
      3. 554070Domain d1j9qb1: 1j9q B:4-166 [62767]
      4. 554071Domain d1j9qb2: 1j9q B:167-339 [62768]
      5. 554072Domain d1j9qc1: 1j9q C:4-166 [62769]
      6. 554073Domain d1j9qc2: 1j9q C:167-339 [62770]
        complexed with cu, no2; mutant
    9. Domains for 1j9r:
      1. 554166Domain d1j9ra1: 1j9r A:4-166 [62771]
      2. 554167Domain d1j9ra2: 1j9r A:167-339 [62772]
      3. 554168Domain d1j9rb1: 1j9r B:4-166 [62773]
      4. 554169Domain d1j9rb2: 1j9r B:167-339 [62774]
      5. 554170Domain d1j9rc1: 1j9r C:4-166 [62775]
      6. 554171Domain d1j9rc2: 1j9r C:167-339 [62776]
        complexed with cu, no2; mutant
    10. Domains for 1j9s:
      1. 554120Domain d1j9sa1: 1j9s A:4-166 [62777]
      2. 554121Domain d1j9sa2: 1j9s A:167-339 [62778]
      3. 554122Domain d1j9sb1: 1j9s B:4-166 [62779]
      4. 554123Domain d1j9sb2: 1j9s B:167-339 [62780]
      5. 554124Domain d1j9sc1: 1j9s C:4-166 [62781]
      6. 554125Domain d1j9sc2: 1j9s C:167-339 [62782]
        complexed with cu, no2; mutant
    11. Domains for 1j9t:
      1. 554146Domain d1j9ta1: 1j9t A:4-166 [62783]
      2. 554147Domain d1j9ta2: 1j9t A:167-339 [62784]
      3. 554148Domain d1j9tb1: 1j9t B:4-166 [62785]
      4. 554149Domain d1j9tb2: 1j9t B:167-339 [62786]
      5. 554150Domain d1j9tc1: 1j9t C:4-166 [62787]
      6. 554151Domain d1j9tc2: 1j9t C:167-339 [62788]
        complexed with cu, no2; mutant
    12. Domains for 1l9o:
      1. 554074Domain d1l9oa1: 1l9o A:4-166 [77828]
      2. 554075Domain d1l9oa2: 1l9o A:167-339 [77829]
      3. 554076Domain d1l9ob1: 1l9o B:4-166 [77830]
      4. 554077Domain d1l9ob2: 1l9o B:167-339 [77831]
      5. 554078Domain d1l9oc1: 1l9o C:4-166 [77832]
      6. 554079Domain d1l9oc2: 1l9o C:167-339 [77833]
        complexed with cu, no2; mutant
    13. Domains for 1l9p:
      1. 554086Domain d1l9pa1: 1l9p A:4-166 [77834]
      2. 554087Domain d1l9pa2: 1l9p A:167-339 [77835]
      3. 554088Domain d1l9pb1: 1l9p B:4-166 [77836]
      4. 554089Domain d1l9pb2: 1l9p B:167-339 [77837]
      5. 554090Domain d1l9pc1: 1l9p C:4-166 [77838]
      6. 554091Domain d1l9pc2: 1l9p C:167-339 [77839]
        complexed with cu, no2; mutant
    14. Domains for 1l9q:
      1. 554080Domain d1l9qa1: 1l9q A:4-166 [77840]
      2. 554081Domain d1l9qa2: 1l9q A:167-339 [77841]
      3. 554082Domain d1l9qb1: 1l9q B:4-166 [77842]
      4. 554083Domain d1l9qb2: 1l9q B:167-339 [77843]
      5. 554084Domain d1l9qc1: 1l9q C:4-166 [77844]
      6. 554085Domain d1l9qc2: 1l9q C:167-339 [77845]
        complexed with cu, no2; mutant
    15. Domains for 1l9r:
      1. 554092Domain d1l9ra1: 1l9r A:4-166 [77846]
      2. 554093Domain d1l9ra2: 1l9r A:167-339 [77847]
      3. 554094Domain d1l9rb1: 1l9r B:4-166 [77848]
      4. 554095Domain d1l9rb2: 1l9r B:167-339 [77849]
      5. 554096Domain d1l9rc1: 1l9r C:4-166 [77850]
      6. 554097Domain d1l9rc2: 1l9r C:167-339 [77851]
        complexed with cu, no2; mutant
    16. Domains for 1l9s:
      1. 554106Domain d1l9sa1: 1l9s A:4-166 [77852]
      2. 554107Domain d1l9sa2: 1l9s A:167-339 [77853]
      3. 554108Domain d1l9sb1: 1l9s B:4-166 [77854]
      4. 554109Domain d1l9sb2: 1l9s B:167-339 [77855]
      5. 554110Domain d1l9sc1: 1l9s C:4-166 [77856]
      6. 554111Domain d1l9sc2: 1l9s C:167-339 [77857]
        complexed with cu, no2; mutant
    17. Domains for 1l9t:
      1. 554098Domain d1l9ta1: 1l9t A:4-166 [77858]
      2. 554099Domain d1l9ta2: 1l9t A:167-339 [77859]
      3. 554100Domain d1l9tb1: 1l9t B:4-166 [77860]
      4. 554101Domain d1l9tb2: 1l9t B:167-339 [77861]
      5. 554102Domain d1l9tc1: 1l9t C:4-166 [77862]
      6. 554103Domain d1l9tc2: 1l9t C:167-339 [77863]
        complexed with cu, no2; mutant
    18. Domains for 1npj:
      1. 554132Domain d1npja1: 1npj A:4-166 [85959]
      2. 554133Domain d1npja2: 1npj A:167-339 [85960]
      3. 554134Domain d1npjb1: 1npj B:4-166 [85961]
      4. 554135Domain d1npjb2: 1npj B:167-339 [85962]
      5. 554136Domain d1npjc1: 1npj C:4-166 [85963]
      6. 554137Domain d1npjc2: 1npj C:167-339 [85964]
        complexed with cu; mutant
    19. Domains for 1npn:
      1. 554112Domain d1npna1: 1npn A:4-166 [85965]
      2. 554113Domain d1npna2: 1npn A:167-339 [85966]
      3. 554114Domain d1npnb1: 1npn B:4-166 [85967]
      4. 554115Domain d1npnb2: 1npn B:167-339 [85968]
      5. 554116Domain d1npnc1: 1npn C:4-166 [85969]
      6. 554117Domain d1npnc2: 1npn C:167-339 [85970]
        complexed with cl, cu; mutant
    20. Domains for 1ntd:
      1. 554158Domain d1ntd_1: 1ntd 5-166 [23088]
      2. 554159Domain d1ntd_2: 1ntd 167-340 [23089]
        complexed with cu, mto; mutant
    21. Domains for 1sjm:
      1. 554062Domain d1sjma1: 1sjm A:5-166 [105654]
      2. 554063Domain d1sjma2: 1sjm A:167-339 [105655]
      3. 554064Domain d1sjmb1: 1sjm B:5-166 [105656]
      4. 554065Domain d1sjmb2: 1sjm B:167-339 [105657]
      5. 554066Domain d1sjmc1: 1sjm C:5-166 [105658]
      6. 554067Domain d1sjmc2: 1sjm C:167-339 [105659]
        complexed with act, cu, no2, trs
    22. Domains for 1snr:
      1. 554056Domain d1snra1: 1snr A:5-166 [105823]
      2. 554057Domain d1snra2: 1snr A:167-339 [105824]
      3. 554058Domain d1snrb1: 1snr B:5-166 [105825]
      4. 554059Domain d1snrb2: 1snr B:167-339 [105826]
      5. 554060Domain d1snrc1: 1snr C:5-166 [105827]
      6. 554061Domain d1snrc2: 1snr C:167-339 [105828]
        complexed with act, cu, cu1, nmo, trs
    23. Domains for 2afn:
      1. 554140Domain d2afna1: 2afn A:9-166 [23082]
      2. 554141Domain d2afna2: 2afn A:167-339 [23083]
      3. 554142Domain d2afnb1: 2afn B:9-166 [23084]
      4. 554143Domain d2afnb2: 2afn B:167-339 [23085]
      5. 554144Domain d2afnc1: 2afn C:9-166 [23086]
      6. 554145Domain d2afnc2: 2afn C:167-339 [23087]
        complexed with cu, mto; mutant
  3. 554178Alcaligenes xylosoxidans [TaxId:85698] [49554] (16 PDB entries)
    1. Domains for 1bq5:
      1. 554203Domain d1bq5_1: 1bq5 8-159 [23110]
      2. 554204Domain d1bq5_2: 1bq5 160-340 [23111]
        complexed with cu
    2. Domains for 1gs6:
      1. 554205Domain d1gs6x1: 1gs6 X:1-159 [65529]
      2. 554206Domain d1gs6x2: 1gs6 X:160-336 [65530]
        complexed with cu, mg; mutant
    3. Domains for 1gs7:
      1. 554191Domain d1gs7a1: 1gs7 A:1-159 [65531]
      2. 554192Domain d1gs7a2: 1gs7 A:160-336 [65532]
        complexed with cu, zn; mutant
    4. Domains for 1gs8:
      1. 554195Domain d1gs8a1: 1gs8 A:1-159 [65533]
      2. 554196Domain d1gs8a2: 1gs8 A:160-336 [65534]
        complexed with cu, zn; mutant
    5. Domains for 1hau:
      1. 554193Domain d1haua1: 1hau A:1-159 [60879]
      2. 554194Domain d1haua2: 1hau A:160-336 [60880]
        complexed with cu, mto
    6. Domains for 1haw:
      1. 554197Domain d1hawa1: 1haw A:1-159 [60881]
      2. 554198Domain d1hawa2: 1haw A:160-336 [60882]
        complexed with cu1, mto
    7. Domains for 1ndr:
      1. 554207Domain d1ndra1: 1ndr A:11-166 [23118]
      2. 554208Domain d1ndra2: 1ndr A:167-340 [23119]
      3. 554209Domain d1ndrb1: 1ndr B:11-166 [23120]
      4. 554210Domain d1ndrb2: 1ndr B:167-340 [23121]
      5. 554211Domain d1ndrc1: 1ndr C:11-166 [23122]
      6. 554212Domain d1ndrc2: 1ndr C:167-340 [23123]
        CA-atoms only
        complexed with cu
    8. Domains for 1nds:
      1. 554213Domain d1ndsa1: 1nds A:11-166 [23112]
      2. 554214Domain d1ndsa2: 1nds A:167-340 [23113]
      3. 554215Domain d1ndsb1: 1nds B:11-166 [23114]
      4. 554216Domain d1ndsb2: 1nds B:167-340 [23115]
      5. 554217Domain d1ndsc1: 1nds C:11-166 [23116]
      6. 554218Domain d1ndsc2: 1nds C:167-340 [23117]
        CA-atoms only
        complexed with cu, no2
    9. Domains for 1ndt:
      1. 554199Domain d1ndta1: 1ndt A:1-159 [23108]
      2. 554200Domain d1ndta2: 1ndt A:160-336 [23109]
        complexed with cla, cua, cub
    10. Domains for 1oe1:
      1. 554179Domain d1oe1a1: 1oe1 A:1-159 [86891]
      2. 554180Domain d1oe1a2: 1oe1 A:160-336 [86892]
        atomic resolution structure
        complexed with cu, pca, pg4
    11. Domains for 1oe2:
      1. 554181Domain d1oe2a1: 1oe2 A:1-159 [86893]
      2. 554182Domain d1oe2a2: 1oe2 A:160-335 [86894]
        complexed with cu, pca, pg4; mutant
    12. Domains for 1oe3:
      1. 554183Domain d1oe3a1: 1oe3 A:1-159 [103903]
      2. 554184Domain d1oe3a2: 1oe3 A:160-336 [103904]
        complexed with cu, peg, pg4
    13. Domains for 1wa0:
      1. 554185Domain d1wa0x1: 1wa0 X:2-159 [114425]
      2. 554186Domain d1wa0x2: 1wa0 X:160-336 [114426]
        complexed with cu, mes, pg4, so4, zn; mutant
    14. Domains for 1wa1:
      1. 554187Domain d1wa1x1: 1wa1 X:2-159 [114427]
      2. 554188Domain d1wa1x2: 1wa1 X:160-336 [114428]
        complexed with cu, mes, so4, zn; mutant
    15. Domains for 1wa2:
      1. 554189Domain d1wa2x1: 1wa2 X:2-159 [114429]
      2. 554190Domain d1wa2x2: 1wa2 X:160-335 [114430]
        complexed with cu, mes, no2, so4, zn; mutant
    16. Domains for 1wae:
      1. 554201Domain d1waea1: 1wae A:2-159 [114434]
      2. 554202Domain d1waea2: 1wae A:160-335 [114435]
        complexed with cu, zn; mutant
  4. 554219Neisseria gonorrhoeae, AniA [TaxId:485] [69193] (2 PDB entries)
    1. Domains for 1kbv:
      1. 554220Domain d1kbva1: 1kbv A:13-163 [68395]
      2. 554221Domain d1kbva2: 1kbv A:164-314 [68396]
      3. 554222Domain d1kbvb1: 1kbv B:13-163 [68397]
      4. 554223Domain d1kbvb2: 1kbv B:164-314 [68398]
      5. 554224Domain d1kbvc1: 1kbv C:13-163 [68399]
      6. 554225Domain d1kbvc2: 1kbv C:164-314 [68400]
      7. 554226Domain d1kbvd1: 1kbv D:13-163 [68401]
      8. 554227Domain d1kbvd2: 1kbv D:164-314 [68402]
      9. 554228Domain d1kbve1: 1kbv E:13-163 [68403]
      10. 554229Domain d1kbve2: 1kbv E:164-314 [68404]
      11. 554230Domain d1kbvf1: 1kbv F:13-163 [68405]
      12. 554231Domain d1kbvf2: 1kbv F:164-314 [68406]
        complexed with cu, no2
    2. Domains for 1kbw:
      1. 554232Domain d1kbwa1: 1kbw A:13-163 [68407]
      2. 554233Domain d1kbwa2: 1kbw A:164-314 [68408]
      3. 554234Domain d1kbwb1: 1kbw B:13-163 [68409]
      4. 554235Domain d1kbwb2: 1kbw B:164-314 [68410]
      5. 554236Domain d1kbwc1: 1kbw C:13-163 [68411]
      6. 554237Domain d1kbwc2: 1kbw C:164-314 [68412]
      7. 554238Domain d1kbwd1: 1kbw D:13-163 [68413]
      8. 554239Domain d1kbwd2: 1kbw D:164-314 [68414]
      9. 554240Domain d1kbwe1: 1kbw E:13-163 [68415]
      10. 554241Domain d1kbwe2: 1kbw E:164-314 [68416]
      11. 554242Domain d1kbwf1: 1kbw F:13-163 [68417]
      12. 554243Domain d1kbwf2: 1kbw F:164-314 [68418]
        complexed with cu
  5. 554244Rhodobacter sphaeroides [TaxId:1063] [110101] (3 PDB entries)
    1. Domains for 1mzy:
      1. 554245Domain d1mzya1: 1mzy A:41-193 [103848]
      2. 554246Domain d1mzya2: 1mzy A:194-371 [103849]
        complexed with cu, mg
    2. Domains for 1mzz:
      1. 554249Domain d1mzza1: 1mzz A:41-193 [103850]
      2. 554250Domain d1mzza2: 1mzz A:194-371 [103851]
      3. 554251Domain d1mzzb1: 1mzz B:1041-1193 [103852]
      4. 554252Domain d1mzzb2: 1mzz B:1194-1371 [103853]
      5. 554253Domain d1mzzc1: 1mzz C:2041-2193 [103854]
      6. 554254Domain d1mzzc2: 1mzz C:2194-2371 [103855]
        complexed with cu; mutant
    3. Domains for 1n70:
      1. 554247Domain d1n70a1: 1n70 A:41-193 [103856]
      2. 554248Domain d1n70a2: 1n70 A:194-371 [103857]
        complexed with cu, mg; mutant

More info for Protein Nitrite reductase, NIR from b.6.1.3: Multidomain cupredoxins

Timeline for Protein Nitrite reductase, NIR from b.6.1.3: Multidomain cupredoxins: