SCOP 1.63: Protein: Nitrite reductase, NIR

Lineage for Protein: Nitrite reductase, NIR

Root: SCOP 1.63
Class b: All beta proteins [48724] (119 folds)
Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
sandwich; 7 strands in 2 sheets, greek-key
variations: some members have additional 1-2 strands
Superfamily b.6.1: Cupredoxins [49503] (5 families)
contains copper-binding site
Family b.6.1.3: Multidomain cupredoxins [49550] (5 proteins)
Protein Nitrite reductase, NIR [49551] (4 species)
consists of two domains of this fold

Species:

Achromobacter cycloclastes [TaxId:223] [49552] (7 PDB entries)
1. Domains for 1nia:
  1. Domain d1niaa1: 1nia A:8-166 [23058]
  2. Domain d1niaa2: 1nia A:167-340 [23059]
  3. Domain d1niab1: 1nia B:8-166 [23060]
  4. Domain d1niab2: 1nia B:167-340 [23061]
  5. Domain d1niac1: 1nia C:8-166 [23062]
  6. Domain d1niac2: 1nia C:167-340 [23063]
    complexed with cu, dis, mto
2. Domains for 1nib:
  1. Domain d1niba1: 1nib A:8-166 [23064]
  2. Domain d1niba2: 1nib A:167-340 [23065]
  3. Domain d1nibb1: 1nib B:8-166 [23066]
  4. Domain d1nibb2: 1nib B:167-340 [23067]
  5. Domain d1nibc1: 1nib C:8-166 [23068]
  6. Domain d1nibc2: 1nib C:167-340 [23069]
    complexed with cu, dis, mto
3. Domains for 1nic:
  1. Domain d1nic_1: 1nic 8-166 [23050]
  2. Domain d1nic_2: 1nic 167-340 [23051]
    complexed with cu, dis, mto, so4
4. Domains for 1nid:
  1. Domain d1nid_1: 1nid 8-166 [23054]
  2. Domain d1nid_2: 1nid 167-340 [23055]
    complexed with cu, no2
5. Domains for 1nie:
  1. Domain d1nie_1: 1nie 8-166 [23052]
  2. Domain d1nie_2: 1nie 167-340 [23053]
    complexed with cu, dis, mto
6. Domains for 1nif:
  1. Domain d1nif_1: 1nif 8-166 [23048]
  2. Domain d1nif_2: 1nif 167-340 [23049]
    complexed with cu, dis, mto
7. Domains for 2nrd:
  1. Domain d2nrd_1: 2nrd 8-166 [23056]
  2. Domain d2nrd_2: 2nrd 167-340 [23057]
    complexed with cu, dis, mto
Alcaligenes faecalis, strain s-6 [TaxId:511] [49553] (19 PDB entries)
1. Domains for 1aq8:
  1. Domain d1aq8a1: 1aq8 A:9-166 [23096]
  2. Domain d1aq8a2: 1aq8 A:167-339 [23097]
  3. Domain d1aq8b1: 1aq8 B:9-166 [23098]
  4. Domain d1aq8b2: 1aq8 B:167-339 [23099]
  5. Domain d1aq8c1: 1aq8 C:9-166 [23100]
  6. Domain d1aq8c2: 1aq8 C:167-339 [23101]
    complexed with cu
2. Domains for 1as6:
  1. Domain d1as6a1: 1as6 A:5-166 [23090]
  2. Domain d1as6a2: 1as6 A:167-339 [23091]
  3. Domain d1as6b1: 1as6 B:4-166 [23092]
  4. Domain d1as6b2: 1as6 B:167-339 [23093]
  5. Domain d1as6c1: 1as6 C:5-166 [23094]
  6. Domain d1as6c2: 1as6 C:167-339 [23095]
    complexed with cu, no2
3. Domains for 1as7:
  1. Domain d1as7a1: 1as7 A:4-166 [23102]
  2. Domain d1as7a2: 1as7 A:167-340 [23103]
  3. Domain d1as7b1: 1as7 B:4-166 [23104]
  4. Domain d1as7b2: 1as7 B:167-340 [23105]
  5. Domain d1as7c1: 1as7 C:4-166 [23106]
  6. Domain d1as7c2: 1as7 C:167-340 [23107]
    complexed with cu
4. Domains for 1as8:
  1. Domain d1as8a1: 1as8 A:4-166 [23074]
  2. Domain d1as8a2: 1as8 A:167-339 [23075]
  3. Domain d1as8b1: 1as8 B:4-166 [23076]
  4. Domain d1as8b2: 1as8 B:167-339 [23077]
  5. Domain d1as8c1: 1as8 C:4-166 [23078]
  6. Domain d1as8c2: 1as8 C:167-339 [23079]
    complexed with cu, no2
5. Domains for 1et5:
  1. Domain d1et5a1: 1et5 A:4-166 [23080]
  2. Domain d1et5a2: 1et5 A:167-339 [23081]
    complexed with cu, zn; mutant
6. Domains for 1et7:
  1. Domain d1et7a1: 1et7 A:4-166 [23070]
  2. Domain d1et7a2: 1et7 A:167-342 [23071]
    complexed with cd, cu; mutant
7. Domains for 1et8:
  1. Domain d1et8a1: 1et8 A:4-166 [23072]
  2. Domain d1et8a2: 1et8 A:167-342 [23073]
    complexed with cu, zn; mutant
8. Domains for 1j9q:
  1. Domain d1j9qa1: 1j9q A:4-166 [62765]
  2. Domain d1j9qa2: 1j9q A:167-339 [62766]
  3. Domain d1j9qb1: 1j9q B:4-166 [62767]
  4. Domain d1j9qb2: 1j9q B:167-339 [62768]
  5. Domain d1j9qc1: 1j9q C:4-166 [62769]
  6. Domain d1j9qc2: 1j9q C:167-339 [62770]
    complexed with cu, no2; mutant
9. Domains for 1j9r:
  1. Domain d1j9ra1: 1j9r A:4-166 [62771]
  2. Domain d1j9ra2: 1j9r A:167-339 [62772]
  3. Domain d1j9rb1: 1j9r B:4-166 [62773]
  4. Domain d1j9rb2: 1j9r B:167-339 [62774]
  5. Domain d1j9rc1: 1j9r C:4-166 [62775]
  6. Domain d1j9rc2: 1j9r C:167-339 [62776]
    complexed with cu, no2; mutant
10. Domains for 1j9s:
  1. Domain d1j9sa1: 1j9s A:4-166 [62777]
  2. Domain d1j9sa2: 1j9s A:167-339 [62778]
  3. Domain d1j9sb1: 1j9s B:4-166 [62779]
  4. Domain d1j9sb2: 1j9s B:167-339 [62780]
  5. Domain d1j9sc1: 1j9s C:4-166 [62781]
  6. Domain d1j9sc2: 1j9s C:167-339 [62782]
    complexed with cu, no2; mutant
11. Domains for 1j9t:
  1. Domain d1j9ta1: 1j9t A:4-166 [62783]
  2. Domain d1j9ta2: 1j9t A:167-339 [62784]
  3. Domain d1j9tb1: 1j9t B:4-166 [62785]
  4. Domain d1j9tb2: 1j9t B:167-339 [62786]
  5. Domain d1j9tc1: 1j9t C:4-166 [62787]
  6. Domain d1j9tc2: 1j9t C:167-339 [62788]
    complexed with cu, no2; mutant
12. Domains for 1l9o:
  1. Domain d1l9oa1: 1l9o A:4-166 [77828]
  2. Domain d1l9oa2: 1l9o A:167-339 [77829]
  3. Domain d1l9ob1: 1l9o B:4-166 [77830]
  4. Domain d1l9ob2: 1l9o B:167-339 [77831]
  5. Domain d1l9oc1: 1l9o C:4-166 [77832]
  6. Domain d1l9oc2: 1l9o C:167-339 [77833]
    complexed with cu, no2; mutant
13. Domains for 1l9p:
  1. Domain d1l9pa1: 1l9p A:4-166 [77834]
  2. Domain d1l9pa2: 1l9p A:167-339 [77835]
  3. Domain d1l9pb1: 1l9p B:4-166 [77836]
  4. Domain d1l9pb2: 1l9p B:167-339 [77837]
  5. Domain d1l9pc1: 1l9p C:4-166 [77838]
  6. Domain d1l9pc2: 1l9p C:167-339 [77839]
    complexed with cu, no2; mutant
14. Domains for 1l9q:
  1. Domain d1l9qa1: 1l9q A:4-166 [77840]
  2. Domain d1l9qa2: 1l9q A:167-339 [77841]
  3. Domain d1l9qb1: 1l9q B:4-166 [77842]
  4. Domain d1l9qb2: 1l9q B:167-339 [77843]
  5. Domain d1l9qc1: 1l9q C:4-166 [77844]
  6. Domain d1l9qc2: 1l9q C:167-339 [77845]
    complexed with cu, no2; mutant
15. Domains for 1l9r:
  1. Domain d1l9ra1: 1l9r A:4-166 [77846]
  2. Domain d1l9ra2: 1l9r A:167-339 [77847]
  3. Domain d1l9rb1: 1l9r B:4-166 [77848]
  4. Domain d1l9rb2: 1l9r B:167-339 [77849]
  5. Domain d1l9rc1: 1l9r C:4-166 [77850]
  6. Domain d1l9rc2: 1l9r C:167-339 [77851]
    complexed with cu, no2; mutant
16. Domains for 1l9s:
  1. Domain d1l9sa1: 1l9s A:4-166 [77852]
  2. Domain d1l9sa2: 1l9s A:167-339 [77853]
  3. Domain d1l9sb1: 1l9s B:4-166 [77854]
  4. Domain d1l9sb2: 1l9s B:167-339 [77855]
  5. Domain d1l9sc1: 1l9s C:4-166 [77856]
  6. Domain d1l9sc2: 1l9s C:167-339 [77857]
    complexed with cu, no2; mutant
17. Domains for 1l9t:
  1. Domain d1l9ta1: 1l9t A:4-166 [77858]
  2. Domain d1l9ta2: 1l9t A:167-339 [77859]
  3. Domain d1l9tb1: 1l9t B:4-166 [77860]
  4. Domain d1l9tb2: 1l9t B:167-339 [77861]
  5. Domain d1l9tc1: 1l9t C:4-166 [77862]
  6. Domain d1l9tc2: 1l9t C:167-339 [77863]
    complexed with cu, no2; mutant
18. Domains for 1ntd:
  1. Domain d1ntd_1: 1ntd 5-166 [23088]
  2. Domain d1ntd_2: 1ntd 167-340 [23089]
    complexed with cu, mto; mutant
19. Domains for 2afn:
  1. Domain d2afna1: 2afn A:9-166 [23082]
  2. Domain d2afna2: 2afn A:167-339 [23083]
  3. Domain d2afnb1: 2afn B:9-166 [23084]
  4. Domain d2afnb2: 2afn B:167-339 [23085]
  5. Domain d2afnc1: 2afn C:9-166 [23086]
  6. Domain d2afnc2: 2afn C:167-339 [23087]
    complexed with cu, mto; mutant
Alcaligenes xylosoxidans [TaxId:85698] [49554] (9 PDB entries)
1. Domains for 1bq5:
  1. Domain d1bq5_1: 1bq5 8-159 [23110]
  2. Domain d1bq5_2: 1bq5 160-340 [23111]
    complexed with cu
2. Domains for 1gs6:
  1. Domain d1gs6x1: 1gs6 X:1-159 [65529]
  2. Domain d1gs6x2: 1gs6 X:160-336 [65530]
    complexed with cu, mg; mutant
3. Domains for 1gs7:
  1. Domain d1gs7a1: 1gs7 A:1-159 [65531]
  2. Domain d1gs7a2: 1gs7 A:160-336 [65532]
    complexed with cu, zn; mutant
4. Domains for 1gs8:
  1. Domain d1gs8a1: 1gs8 A:1-159 [65533]
  2. Domain d1gs8a2: 1gs8 A:160-336 [65534]
    complexed with cu, zn; mutant
5. Domains for 1hau:
  1. Domain d1haua1: 1hau A:1-159 [60879]
  2. Domain d1haua2: 1hau A:160-336 [60880]
    complexed with cu, mto
6. Domains for 1haw:
  1. Domain d1hawa1: 1haw A:1-159 [60881]
  2. Domain d1hawa2: 1haw A:160-336 [60882]
    complexed with cu1, mto
7. Domains for 1ndr:
  1. Domain d1ndra1: 1ndr A:11-166 [23118]
  2. Domain d1ndra2: 1ndr A:167-340 [23119]
  3. Domain d1ndrb1: 1ndr B:11-166 [23120]
  4. Domain d1ndrb2: 1ndr B:167-340 [23121]
  5. Domain d1ndrc1: 1ndr C:11-166 [23122]
  6. Domain d1ndrc2: 1ndr C:167-340 [23123]
    CA-atoms only
    complexed with cu
8. Domains for 1nds:
  1. Domain d1ndsa1: 1nds A:11-166 [23112]
  2. Domain d1ndsa2: 1nds A:167-340 [23113]
  3. Domain d1ndsb1: 1nds B:11-166 [23114]
  4. Domain d1ndsb2: 1nds B:167-340 [23115]
  5. Domain d1ndsc1: 1nds C:11-166 [23116]
  6. Domain d1ndsc2: 1nds C:167-340 [23117]
    CA-atoms only
    complexed with cu, no2
9. Domains for 1ndt:
  1. Domain d1ndta1: 1ndt A:1-159 [23108]
  2. Domain d1ndta2: 1ndt A:160-336 [23109]
    complexed with cla, cua, cub
Neisseria gonorrhoeae, AniA [TaxId:485] [69193] (2 PDB entries)
1. Domains for 1kbv:
  1. Domain d1kbva1: 1kbv A:13-163 [68395]
  2. Domain d1kbva2: 1kbv A:164-314 [68396]
  3. Domain d1kbvb1: 1kbv B:13-163 [68397]
  4. Domain d1kbvb2: 1kbv B:164-314 [68398]
  5. Domain d1kbvc1: 1kbv C:13-163 [68399]
  6. Domain d1kbvc2: 1kbv C:164-314 [68400]
  7. Domain d1kbvd1: 1kbv D:13-163 [68401]
  8. Domain d1kbvd2: 1kbv D:164-314 [68402]
  9. Domain d1kbve1: 1kbv E:13-163 [68403]
  10. Domain d1kbve2: 1kbv E:164-314 [68404]
  11. Domain d1kbvf1: 1kbv F:13-163 [68405]
  12. Domain d1kbvf2: 1kbv F:164-314 [68406]
    complexed with cu, no2
2. Domains for 1kbw:
  1. Domain d1kbwa1: 1kbw A:13-163 [68407]
  2. Domain d1kbwa2: 1kbw A:164-314 [68408]
  3. Domain d1kbwb1: 1kbw B:13-163 [68409]
  4. Domain d1kbwb2: 1kbw B:164-314 [68410]
  5. Domain d1kbwc1: 1kbw C:13-163 [68411]
  6. Domain d1kbwc2: 1kbw C:164-314 [68412]
  7. Domain d1kbwd1: 1kbw D:13-163 [68413]
  8. Domain d1kbwd2: 1kbw D:164-314 [68414]
  9. Domain d1kbwe1: 1kbw E:13-163 [68415]
  10. Domain d1kbwe2: 1kbw E:164-314 [68416]
  11. Domain d1kbwf1: 1kbw F:13-163 [68417]
  12. Domain d1kbwf2: 1kbw F:164-314 [68418]
    complexed with cu

More info for Protein Nitrite reductase, NIR from b.6.1.3: Multidomain cupredoxins

Timeline for Protein Nitrite reductase, NIR from b.6.1.3: Multidomain cupredoxins:

Protein Nitrite reductase, NIR from b.6.1.3: Multidomain cupredoxins first appeared (with stable ids) in SCOP 1.55
Protein Nitrite reductase, NIR from b.6.1.3: Multidomain cupredoxins appears in SCOP 1.61
Protein Nitrite reductase, NIR from b.6.1.3: Multidomain cupredoxins appears in SCOP 1.65
Protein Nitrite reductase, NIR from b.6.1.3: Multidomain cupredoxins last appears in SCOPe 2.07