SCOPe 2.07: Protein: Cyclomaltodextrin glycanotransferase, domain D

Lineage for Protein: Cyclomaltodextrin glycanotransferase, domain D

Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds)
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.18: E set domains [81296] (24 families)
"Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies

Family b.1.18.2: E-set domains of sugar-utilizing enzymes [81282] (20 proteins)
domains of unknown function associated with different type of catalytic domains in a different sequential location
subgroup of the larger IPT/TIG domain family

Protein Cyclomaltodextrin glycanotransferase, domain D [49215] (4 species)
follows the starch-binding domain C; the catalytic domain A has (beta/alpha)8-barrel fold; family 13 glycosyl hydrolases

Species:

Bacillus circulans, different strains [TaxId:1397] [49216] (36 PDB entries)
1. Domain for 1cdg:
  - Domain d1cdga1: 1cdg A:496-581 [21816]
    Other proteins in same PDB: d1cdga2, d1cdga3, d1cdga4
    complexed with ca, mal
2. Domain for 1cgt:
  - Domain d1cgta1: 1cgt A:495-579 [21815]
    Other proteins in same PDB: d1cgta2, d1cgta3, d1cgta4
    complexed with ca
3. Domain for 1cgu:
  - Domain d1cgua1: 1cgu A:495-579 [21838]
    Other proteins in same PDB: d1cgua2, d1cgua3, d1cgua4
    complexed with ca
4. Domain for 1cgv:
  - Domain d1cgva1: 1cgv A:496-581 [21820]
    Other proteins in same PDB: d1cgva2, d1cgva3, d1cgva4
    complexed with ca, mal; mutant
5. Domain for 1cgw:
  - Domain d1cgwa1: 1cgw A:496-581 [21822]
    Other proteins in same PDB: d1cgwa2, d1cgwa3, d1cgwa4
    complexed with ca, mal; mutant
6. Domain for 1cgx:
  - Domain d1cgxa1: 1cgx A:496-581 [21832]
    Other proteins in same PDB: d1cgxa2, d1cgxa3, d1cgxa4
    complexed with ca, mal; mutant
7. Domain for 1cgy:
  - Domain d1cgya1: 1cgy A:496-581 [21823]
    Other proteins in same PDB: d1cgya2, d1cgya3, d1cgya4
    complexed with ca, mal; mutant
8. Domain for 1cxe:
  - Domain d1cxea1: 1cxe A:496-581 [21817]
    Other proteins in same PDB: d1cxea2, d1cxea3, d1cxea4
    complexed with ca, mal
9. Domain for 1cxf:
  - Domain d1cxfa1: 1cxf A:496-581 [21841]
    Other proteins in same PDB: d1cxfa2, d1cxfa3, d1cxfa4
    complexed with acx, ca, mal; mutant
10. Domain for 1cxh:
  - Domain d1cxha1: 1cxh A:496-581 [21821]
    Other proteins in same PDB: d1cxha2, d1cxha3, d1cxha4
    complexed with ca, mal
11. Domain for 1cxi:
  - Domain d1cxia1: 1cxi A:496-581 [21818]
    Other proteins in same PDB: d1cxia2, d1cxia3, d1cxia4
    complexed with ca, mal
12. Domain for 1cxk:
  - Domain d1cxka1: 1cxk A:497-583 [21835]
    Other proteins in same PDB: d1cxka2, d1cxka3, d1cxka4
    complexed with ca, glc
13. Domain for 1cxl:
  - Domain d1cxla1: 1cxl A:497-583 [21829]
    Other proteins in same PDB: d1cxla2, d1cxla3, d1cxla4
    complexed with ca, mpd
14. Domain for 1d3c:
  - Domain d1d3ca1: 1d3c A:497-583 [21827]
    Other proteins in same PDB: d1d3ca2, d1d3ca3, d1d3ca4
    complexed with ca, mpd
15. Domain for 1dtu:
  - Domain d1dtua1: 1dtu A:497-583 [21840]
    Other proteins in same PDB: d1dtua2, d1dtua3, d1dtua4
    complexed with adh, bgc, ca, g6d, glc; mutant
16. Domain for 1eo5:
  - Domain d1eo5a1: 1eo5 A:497-583 [21828]
    Other proteins in same PDB: d1eo5a2, d1eo5a3, d1eo5a4
    complexed with ca, mpd
17. Domain for 1eo7:
  - Domain d1eo7a1: 1eo7 A:497-583 [21842]
    Other proteins in same PDB: d1eo7a2, d1eo7a3, d1eo7a4
    complexed with ca
18. Domain for 1kck:
  - Domain d1kcka1: 1kck A:496-581 [68441]
    Other proteins in same PDB: d1kcka2, d1kcka3, d1kcka4
    complexed with adh, bgc, ca, g6d, glc; mutant
19. Domain for 1kcl:
  - Domain d1kcla1: 1kcl A:496-581 [68445]
    Other proteins in same PDB: d1kcla2, d1kcla3, d1kcla4
    complexed with ca, glc, mal, mpd; mutant
20. Domain for 1ot1:
  - Domain d1ot1a1: 1ot1 A:496-581 [87392]
    Other proteins in same PDB: d1ot1a2, d1ot1a3, d1ot1a4
    complexed with acy, ca, epe, mal, mpd; mutant
21. Domain for 1ot2:
  - Domain d1ot2a1: 1ot2 A:496-581 [87396]
    Other proteins in same PDB: d1ot2a2, d1ot2a3, d1ot2a4
    complexed with acy, ca, epe, glc, mal, mpd; mutant
22. Domain for 1pez:
  - Domain d1peza1: 1pez A:496-581 [94600]
    Other proteins in same PDB: d1peza2, d1peza3, d1peza4
    complexed with acy, ca, epe, mal, mpd; mutant
23. Domain for 1pj9:
  - Domain d1pj9a1: 1pj9 A:496-581 [94754]
    Other proteins in same PDB: d1pj9a2, d1pj9a3, d1pj9a4
    complexed with acy, ca, glc, mal, mpd; mutant
24. Domains for 1tcm:
  1. Domain d1tcma1: 1tcm A:496-581 [21833]
    Other proteins in same PDB: d1tcma2, d1tcma3, d1tcma4, d1tcmb2, d1tcmb3, d1tcmb4
    complexed with ca; mutant
  2. Domain d1tcmb1: 1tcm B:496-581 [21834]
    Other proteins in same PDB: d1tcma2, d1tcma3, d1tcma4, d1tcmb2, d1tcmb3, d1tcmb4
    complexed with ca; mutant
25. Domains for 1ukq:
  1. Domain d1ukqa1: 1ukq A:496-581 [99509]
    Other proteins in same PDB: d1ukqa2, d1ukqa3, d1ukqa4, d1ukqb2, d1ukqb3, d1ukqb4
    complexed with aci, bgc, ca, g6d, glc
  2. Domain d1ukqb1: 1ukq B:496-581 [99513]
    Other proteins in same PDB: d1ukqa2, d1ukqa3, d1ukqa4, d1ukqb2, d1ukqb3, d1ukqb4
    complexed with aci, bgc, ca, g6d, glc
26. Domains for 1uks:
  1. Domain d1uksa1: 1uks A:496-581 [99517]
    Other proteins in same PDB: d1uksa2, d1uksa3, d1uksa4, d1uksb2, d1uksb3, d1uksb4
    complexed with aci, ca, gal, glc, gld; mutant
  2. Domain d1uksb1: 1uks B:496-581 [99521]
    Other proteins in same PDB: d1uksa2, d1uksa3, d1uksa4, d1uksb2, d1uksb3, d1uksb4
    complexed with aci, ca, gal, glc, gld; mutant
27. Domains for 1ukt:
  1. Domain d1ukta1: 1ukt A:496-581 [99525]
    Other proteins in same PDB: d1ukta2, d1ukta3, d1ukta4, d1uktb2, d1uktb3, d1uktb4
    complexed with aci, ca, gal, glc, gld; mutant
  2. Domain d1uktb1: 1ukt B:496-581 [99529]
    Other proteins in same PDB: d1ukta2, d1ukta3, d1ukta4, d1uktb2, d1uktb3, d1uktb4
    complexed with aci, ca, gal, glc, gld; mutant
28. Domain for 2cxg:
  - Domain d2cxga1: 2cxg A:496-581 [21839]
    Other proteins in same PDB: d2cxga2, d2cxga3, d2cxga4
    complexed with aci, ca, g6d, glc
29. Domain for 2dij:
  - Domain d2dija1: 2dij A:497-583 [21836]
    Other proteins in same PDB: d2dija2, d2dija3, d2dija4
    complexed with adh, ca, g6d, glc; mutant
30. Domain for 3cgt:
  - Domain d3cgta1: 3cgt A:496-581 [21819]
    Other proteins in same PDB: d3cgta2, d3cgta3, d3cgta4
    complexed with bcd, ca
31. Domain for 4cgt:
  - Domain d4cgta1: 4cgt A:496-581 [21825]
    Other proteins in same PDB: d4cgta2, d4cgta3, d4cgta4
    complexed with ca; mutant
32. Domain for 5cgt:
  - Domain d5cgta1: 5cgt A:496-581 [21824]
    Other proteins in same PDB: d5cgta2, d5cgta3, d5cgta4
    complexed with ca, glc; mutant
33. Domain for 6cgt:
  - Domain d6cgta1: 6cgt A:495-579 [21837]
    Other proteins in same PDB: d6cgta2, d6cgta3, d6cgta4
    complexed with ca; mutant
34. Domain for 7cgt:
  - Domain d7cgta1: 7cgt A:496-581 [21826]
    Other proteins in same PDB: d7cgta2, d7cgta3, d7cgta4
    complexed with ca; mutant
35. Domain for 8cgt:
  - Domain d8cgta1: 8cgt A:495-579 [21831]
    Other proteins in same PDB: d8cgta2, d8cgta3, d8cgta4
    complexed with ca, tm6
36. Domain for 9cgt:
  - Domain d9cgta1: 9cgt A:495-579 [21830]
    Other proteins in same PDB: d9cgta2, d9cgta3, d9cgta4
    complexed with ca, tm5
Bacillus sp., strain 1011 [TaxId:1409] [49219] (8 PDB entries)
Uniprot P05618
1. Domains for 1d7f:
  1. Domain d1d7fa1: 1d7f A:497-582 [21848]
    Other proteins in same PDB: d1d7fa2, d1d7fa3, d1d7fa4, d1d7fb2, d1d7fb3, d1d7fb4
    complexed with ca
  2. Domain d1d7fb1: 1d7f B:497-582 [21849]
    Other proteins in same PDB: d1d7fa2, d1d7fa3, d1d7fa4, d1d7fb2, d1d7fb3, d1d7fb4
    complexed with ca
2. Domains for 1ded:
  1. Domain d1deda1: 1ded A:497-582 [21850]
    Other proteins in same PDB: d1deda2, d1deda3, d1deda4, d1dedb2, d1dedb3, d1dedb4
    complexed with ca, qps
  2. Domain d1dedb1: 1ded B:497-582 [21851]
    Other proteins in same PDB: d1deda2, d1deda3, d1deda4, d1dedb2, d1dedb3, d1dedb4
    complexed with ca, qps
3. Domains for 1i75:
  1. Domain d1i75a1: 1i75 A:497-582 [61869]
    Other proteins in same PDB: d1i75a2, d1i75a3, d1i75a4, d1i75b2, d1i75b3, d1i75b4
    complexed with ca, noj
  2. Domain d1i75b1: 1i75 B:497-582 [61873]
    Other proteins in same PDB: d1i75a2, d1i75a3, d1i75a4, d1i75b2, d1i75b3, d1i75b4
    complexed with ca, noj
4. Domains for 1pam:
  1. Domain d1pama1: 1pam A:497-582 [21846]
    Other proteins in same PDB: d1pama2, d1pama3, d1pama4, d1pamb2, d1pamb3, d1pamb4
    complexed with ca
  2. Domain d1pamb1: 1pam B:497-582 [21847]
    Other proteins in same PDB: d1pama2, d1pama3, d1pama4, d1pamb2, d1pamb3, d1pamb4
    complexed with ca
5. Domains for 1v3j:
  1. Domain d1v3ja1: 1v3j A:497-582 [108305]
    Other proteins in same PDB: d1v3ja2, d1v3ja3, d1v3ja4, d1v3jb2, d1v3jb3, d1v3jb4
    complexed with ca; mutant
  2. Domain d1v3jb1: 1v3j B:497-582 [108309]
    Other proteins in same PDB: d1v3ja2, d1v3ja3, d1v3ja4, d1v3jb2, d1v3jb3, d1v3jb4
    complexed with ca; mutant
6. Domains for 1v3k:
  1. Domain d1v3ka1: 1v3k A:497-582 [108313]
    Other proteins in same PDB: d1v3ka2, d1v3ka3, d1v3ka4, d1v3kb2, d1v3kb3, d1v3kb4
    complexed with ca; mutant
  2. Domain d1v3kb1: 1v3k B:497-582 [108317]
    Other proteins in same PDB: d1v3ka2, d1v3ka3, d1v3ka4, d1v3kb2, d1v3kb3, d1v3kb4
    complexed with ca; mutant
7. Domains for 1v3l:
  1. Domain d1v3la1: 1v3l A:497-582 [108321]
    Other proteins in same PDB: d1v3la2, d1v3la3, d1v3la4, d1v3lb2, d1v3lb3, d1v3lb4
    complexed with aci, ca, gal, glc, gld; mutant
  2. Domain d1v3lb1: 1v3l B:497-582 [108325]
    Other proteins in same PDB: d1v3la2, d1v3la3, d1v3la4, d1v3lb2, d1v3lb3, d1v3lb4
    complexed with aci, ca, gal, glc, gld; mutant
8. Domains for 1v3m:
  1. Domain d1v3ma1: 1v3m A:497-582 [108329]
    Other proteins in same PDB: d1v3ma2, d1v3ma3, d1v3ma4, d1v3mb2, d1v3mb3, d1v3mb4
    complexed with aci, ca, gal, glc, gld; mutant
  2. Domain d1v3mb1: 1v3m B:497-582 [108333]
    Other proteins in same PDB: d1v3ma2, d1v3ma3, d1v3ma4, d1v3mb2, d1v3mb3, d1v3mb4
    complexed with aci, ca, gal, glc, gld; mutant
Bacillus stearothermophilus [TaxId:1422] [49217] (1 PDB entry)
- Domain for 1cyg:
  - Domain d1cyga1: 1cyg A:492-574 [21843]
    Other proteins in same PDB: d1cyga2, d1cyga3, d1cyga4
    complexed with ca
Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId:33950] [49220] (4 PDB entries)
1. Domain for 1a47:
  - Domain d1a47a1: 1a47 A:496-578 [21853]
    Other proteins in same PDB: d1a47a2, d1a47a3, d1a47a4
    complexed with adh, ca, g6d, glc
2. Domain for 1ciu:
  - Domain d1ciua1: 1ciu A:496-578 [21852]
    Other proteins in same PDB: d1ciua2, d1ciua3, d1ciua4
    complexed with ca
3. Domain for 3bmv:
  - Domain d3bmva1: 3bmv A:496-578 [155416]
    Other proteins in same PDB: d3bmva2, d3bmva3, d3bmva4
    automated match to d3bmva1
    complexed with ca, gol, so4; mutant
4. Domain for 3bmw:
  - Domain d3bmwa1: 3bmw A:496-578 [155420]
    Other proteins in same PDB: d3bmwa2, d3bmwa3, d3bmwa4
    automated match to d3bmwa1
    complexed with aci, ca, cl, g6d, glc, gol, so4; mutant

More info for Protein Cyclomaltodextrin glycanotransferase, domain D from b.1.18.2: E-set domains of sugar-utilizing enzymes

Timeline for Protein Cyclomaltodextrin glycanotransferase, domain D from b.1.18.2: E-set domains of sugar-utilizing enzymes:

Protein Cyclomaltodextrin glycanotransferase, domain D from b.1.18.2: E-set domains of sugar-utilizing enzymes first appeared (with stable ids) in SCOP 1.55, called Protein Cyclodextrin glycosyltransferase, domain E from b.1.1.5: E set domains
Protein Cyclomaltodextrin glycanotransferase, domain D from b.1.18.2: E-set domains of sugar-utilizing enzymes appears in SCOPe 2.06
Protein Cyclomaltodextrin glycanotransferase, domain D from b.1.18.2: E-set domains of sugar-utilizing enzymes appears in the current release, SCOPe 2.08