Lineage for Family b.1.1.4: I set domains

  1. Root: SCOPe 2.02
  2. 1103260Class b: All beta proteins [48724] (174 folds)
  3. 1103261Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1103262Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1109354Family b.1.1.4: I set domains [49159] (39 proteins)

Proteins:

  1. 1109355Axonin-1 [49184] (1 species)
    tandem repeat of 4 L1 domains
  2. 1109361B and T lymphocyte attenuator, Btla [117041] (1 species)
  3. 1109364Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain [81956] (1 species)
  4. 1109367Cardiac myosin binding protein C, different domains [89185] (1 species)
  5. 1109373CD3 delta chain ectodomain fragment [117043] (1 species)
  6. 1109377CD3 epsilon chain ectodomain fragment [69162] (3 species)
    possibly an intermediate structure between the I set and FnIII domains
    1. 1109378Species Human (Homo sapiens) [TaxId:9606] [110051] (2 PDB entries)
      Uniprot P07766 33-123 ! Uniprot P07766 # CD3E_HUMAN T-cell surface glycoprotein CD3 epsilon chain precursor
    2. 1109382Species Mouse (Mus musculus) [TaxId:10090] [69163] (2 PDB entries)
      Uniprot P22646 22-100
    3. 1109385Species Sheep (Ovis aries) [TaxId:9940] [117040] (1 PDB entry)
      Uniprot P18438 22-88
  7. 1109387CD3 gamma chain ectodomain fragment [69160] (2 species)
    possibly an intermediate structure between the I set and FnIII domains
    1. 1109388Species Human (Homo sapiens) [TaxId:9606] [110050] (1 PDB entry)
      Uniprot P09693 # CD3G_HUMAN T-cell surface glycoprotein CD3 gamma chain precursor
    2. 1109390Species Mouse (Mus musculus) [TaxId:10090] [69161] (1 PDB entry)
  8. 1109392Cervical EMMPRIN [158877] (1 species)
    contains two Ig-domains in the N-terminal part
  9. 1109402Fc gamma receptor ectodomain (CD32) [49196] (3 species)
    possibly an intermediate structure between the I set and FnIII domains
    1. 1109403Species Human (Homo sapiens), IIa [TaxId:9606] [49197] (2 PDB entries)
    2. 1109408Species Human (Homo sapiens), IIb [TaxId:9606] [49198] (1 PDB entry)
    3. 1109411Species Human (Homo sapiens), III [TaxId:9606] [49199] (5 PDB entries)
      Uniprot O75015 23-189
  10. 1109422Fibroblast growth factor receptor, FGFR [49179] (4 species)
    1. 1109423Species Human (Homo sapiens), FGFR1 [TaxId:9606] [49180] (4 PDB entries)
    2. 1109440Species Human (Homo sapiens), FGFR2a [TaxId:9606] [49181] (7 PDB entries)
    3. 1109474Species Human (Homo sapiens), FGFR2b [TaxId:9606] [81955] (1 PDB entry)
    4. 1109477Species Human (Homo sapiens), FGFR3c [TaxId:9606] [101514] (1 PDB entry)
  11. 1109480Hemolin [49182] (1 species)
    Duplication: tandem repeat of 4 domains, known as L1 domains
  12. 1109490High affinity nerve growth factor receptor TrkA, different domains [49190] (1 species)
  13. 1109501Ig alpha Fc receptor, FCARI (CD89) [89188] (1 species)
    possibly an intermediate structure between the I set and FnIII domains
  14. 1109513IgE high affinity receptor alpha subunit [49200] (1 species)
    possibly an intermediate structure between the I set and FnIII domains
  15. 1109553Intercellular adhesion molecule-1, ICAM-1 [49162] (1 species)
  16. 1109570Intercellular adhesion molecule-2, ICAM-2 [49164] (1 species)
  17. 1109573Interleukin-6 receptor alpha chain, N-terminal domain [81958] (1 species)
  18. 1109576Junction adhesion molecule, JAM, C-terminal domain [49186] (2 species)
    1. 1109577Species Human (Homo sapiens) [TaxId:9606] [89187] (1 PDB entry)
    2. 1109580Species Mouse (Mus musculus) [TaxId:10090] [49187] (1 PDB entry)
  19. 1109582Killer cell inhibitory receptor [49202] (4 species)
    possibly an intermediate structure between the I set and FnIII domains
    1. 1109583Species Human (Homo sapiens), 2dl2 [TaxId:9606] [49205] (2 PDB entries)
    2. 1109588Species Human (Homo sapiens), kir2dl3 [TaxId:9606] [49203] (2 PDB entries)
    3. 1109595Species Human (Homo sapiens), kir2ds3, CD158j [TaxId:9606] [89190] (1 PDB entry)
    4. 1109598Species Human (Homo sapiens), p58-cl42 kir [TaxId:9606] [49204] (2 PDB entries)
  20. 1109603Ligand binding domain of lir-1 (ilt2) [49206] (1 species)
    possibly an intermediate structure between the I set and FnIII domains
  21. 1109617Ligand binding domain of lir-2 (ilt4) [158879] (1 species)
  22. 1109621Ligand binding domain of NK receptor NKp46 [101519] (1 species)
    possibly an intermediate structure between the I set and FnIII domains
  23. 1109627Ligand binding domain of trkB receptor [49192] (1 species)
  24. 1109632Mucosal addressin cell adhesion molecule-1 (MADCAM-1) [49168] (1 species)
  25. 1109638Myosin-binding protein C, slow-type [141013] (1 species)
  26. 1109642Neural cell adhesion molecule (NCAM) [49166] (2 species)
    1. 1109643Species Chicken (Gallus gallus) [TaxId:9031] [63664] (1 PDB entry)
    2. 1109645Species Norway rat (Rattus norvegicus) [TaxId:10116] [49167] (4 PDB entries)
      Rat and mouse sequences are identical for the two N-terminal modules
  27. 1109659NT3 binding domain of trkC receptor [49194] (1 species)
  28. 1109662Perlecan Ig3 domain [69158] (1 species)
  29. 1109665Receptor-type tyrosine-protein phosphatase mu [141015] (1 species)
  30. 1109668Second domain of the Flt-1 receptor [49188] (1 species)
  31. 1109680Semaphorin 4d Ig-like domain [101515] (1 species)
  32. 1109684Telokin [49170] (2 species)
    1. 1109685Species Human (Homo sapiens) [TaxId:9606] [141012] (1 PDB entry)
      Uniprot Q9UIT9 1238-1338
    2. 1109687Species Turkey (Meleagris gallopavo) [TaxId:9103] [49171] (2 PDB entries)
  33. 1109690The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain [63665] (1 species)
  34. 1109699Titin [49172] (1 species)
  35. 1109708Twitchin [49174] (2 species)
    1. 1109709Species Human (Homo sapiens), Ig repeat 27 [TaxId:9606] [49176] (2 PDB entries)
    2. 1109712Species Nematode (Caenorhabditis elegans) [TaxId:6239] [49175] (3 PDB entries)
      different modules
  36. 1109716Type-1 interleukin-1 receptor [49177] (1 species)
    duplication: tandem repeat of 3 domains
  37. 1109727Tyrosine-protein kinase receptor tyro3, second domain [101517] (1 species)
  38. 1109731Vascular cell adhesion molecule-1 (VCAM-1) [49160] (1 species)
  39. 1109738automated matches [190803] (1 species)
    not a true protein

More info for Family b.1.1.4: I set domains

Timeline for Family b.1.1.4: I set domains: