SCOPe 2.04: Protein: CD4 V-set domains

Lineage for Protein: CD4 V-set domains

Root: SCOPe 2.04
Class b: All beta proteins [48724] (176 folds)
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.1: Immunoglobulin [48726] (5 families)
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
Protein CD4 V-set domains [48737] (2 species)

Species:

Human (Homo sapiens) [TaxId:9606] [48738] (31 PDB entries)
1. Domain for 1cdh:
  - Domain d1cdha1: 1cdh A:1-97 [19722]
    Other proteins in same PDB: d1cdha2
    domain 1
2. Domain for 1cdi:
  - Domain d1cdia1: 1cdi A:0-97 [19727]
    Other proteins in same PDB: d1cdia2
    domain 1
3. Domain for 1cdj:
  - Domain d1cdja1: 1cdj A:1-97 [19725]
    Other proteins in same PDB: d1cdja2
    domain 1
4. Domain for 1cdu:
  - Domain d1cdua1: 1cdu A:1-97 [19723]
    Other proteins in same PDB: d1cdua2
    domain 1
    mutant
5. Domain for 1cdy:
  - Domain d1cdya1: 1cdy A:1-97 [19719]
    Other proteins in same PDB: d1cdya2
    domain 1
    mutant
6. Domain for 1g9m:
  - Domain d1g9mc1: 1g9m C:1-97 [19721]
    Other proteins in same PDB: d1g9mc2, d1g9mg_, d1g9mh1, d1g9mh2, d1g9ml1, d1g9ml2
    domain 1
    complexed with ipa, nag, ndg
7. Domain for 1g9n:
  - Domain d1g9nc1: 1g9n C:1-97 [19726]
    Other proteins in same PDB: d1g9nc2, d1g9ng_, d1g9nh1, d1g9nh2, d1g9nl1, d1g9nl2
    domain 1
    complexed with nag, ndg
8. Domain for 1gc1:
  - Domain d1gc1c1: 1gc1 C:1-97 [19724]
    Other proteins in same PDB: d1gc1c2, d1gc1g_, d1gc1h1, d1gc1h2, d1gc1l1, d1gc1l2
    domain 1
    complexed with nag
9. Domain for 1jl4:
  - Domain d1jl4d1: 1jl4 D:1-97 [63161]
    Other proteins in same PDB: d1jl4a1, d1jl4a2, d1jl4b1, d1jl4b2, d1jl4d2
    domain 1
10. Domain for 1rzj:
  - Domain d1rzjc1: 1rzj C:1-97 [98198]
    Other proteins in same PDB: d1rzjc2, d1rzjg_, d1rzjh1, d1rzjh2, d1rzjl1, d1rzjl2
    domain 1
    complexed with ipa, nag, ndg
11. Domain for 1rzk:
  - Domain d1rzkc1: 1rzk C:1-97 [98205]
    Other proteins in same PDB: d1rzkc2, d1rzkg_, d1rzkh1, d1rzkh2, d1rzkl1, d1rzkl2
    domain 1
    complexed with nag, ndg
12. Domains for 1wio:
  1. Domain d1wioa1: 1wio A:1-97 [19728]
    Other proteins in same PDB: d1wioa3, d1wioa4, d1wiob3, d1wiob4
    domains 1 and 3
  2. Domain d1wioa2: 1wio A:179-291 [19729]
    Other proteins in same PDB: d1wioa3, d1wioa4, d1wiob3, d1wiob4
    domains 1 and 3
  3. Domain d1wiob1: 1wio B:1-97 [19730]
    Other proteins in same PDB: d1wioa3, d1wioa4, d1wiob3, d1wiob4
    domains 1 and 3
  4. Domain d1wiob2: 1wio B:179-291 [19731]
    Other proteins in same PDB: d1wioa3, d1wioa4, d1wiob3, d1wiob4
    domains 1 and 3
13. Domains for 1wip:
  1. Domain d1wipa1: 1wip A:1-97 [19732]
    Other proteins in same PDB: d1wipa3, d1wipa4, d1wipb3, d1wipb4
    domains 1 and 3
  2. Domain d1wipa2: 1wip A:179-291 [19733]
    Other proteins in same PDB: d1wipa3, d1wipa4, d1wipb3, d1wipb4
    domains 1 and 3
  3. Domain d1wipb1: 1wip B:1-97 [19734]
    Other proteins in same PDB: d1wipa3, d1wipa4, d1wipb3, d1wipb4
    domains 1 and 3
  4. Domain d1wipb2: 1wip B:179-291 [19735]
    Other proteins in same PDB: d1wipa3, d1wipa4, d1wipb3, d1wipb4
    domains 1 and 3
14. Domains for 1wiq:
  1. Domain d1wiqa1: 1wiq A:1-97 [19736]
    Other proteins in same PDB: d1wiqa3, d1wiqa4, d1wiqb3, d1wiqb4
    domains 1 and 3
  2. Domain d1wiqa2: 1wiq A:179-291 [19737]
    Other proteins in same PDB: d1wiqa3, d1wiqa4, d1wiqb3, d1wiqb4
    domains 1 and 3
  3. Domain d1wiqb1: 1wiq B:1-97 [19738]
    Other proteins in same PDB: d1wiqa3, d1wiqa4, d1wiqb3, d1wiqb4
    domains 1 and 3
  4. Domain d1wiqb2: 1wiq B:179-291 [19739]
    Other proteins in same PDB: d1wiqa3, d1wiqa4, d1wiqb3, d1wiqb4
    domains 1 and 3
15. Domain for 2b4c:
  - Domain d2b4cc1: 2b4c C:1-97 [127820]
    Other proteins in same PDB: d2b4cc2, d2b4cg1, d2b4ch1, d2b4ch2, d2b4cl1, d2b4cl2
    automatically matched to d1cdi_1
    complexed with nag, ndg, so4, xyl
16. Domain for 2nxy:
  - Domain d2nxyb1: 2nxy B:1001-1097 [138745]
    Other proteins in same PDB: d2nxya1, d2nxyb2, d2nxyc1, d2nxyc2, d2nxyd1, d2nxyd2
    complexed with hez, nag, trs
17. Domain for 2nxz:
  - Domain d2nxzb1: 2nxz B:1001-1097 [138751]
    Other proteins in same PDB: d2nxza1, d2nxzb2, d2nxzc1, d2nxzc2, d2nxzd1, d2nxzd2
    complexed with edo, hez, ipa, nag, suc
18. Domain for 2ny0:
  - Domain d2ny0b1: 2ny0 B:1001-1097 [138758]
    Other proteins in same PDB: d2ny0a1, d2ny0b2, d2ny0c1, d2ny0c2, d2ny0d1, d2ny0d2
    complexed with hez, nag
19. Domain for 2ny1:
  - Domain d2ny1b1: 2ny1 B:1001-1097 [138764]
    Other proteins in same PDB: d2ny1a1, d2ny1b2, d2ny1c1, d2ny1c2, d2ny1d1, d2ny1d2
    complexed with nag, suc
20. Domain for 2ny2:
  - Domain d2ny2b1: 2ny2 B:1001-1097 [138770]
    Other proteins in same PDB: d2ny2a1, d2ny2b2, d2ny2c1, d2ny2c2, d2ny2d1, d2ny2d2
    complexed with edo, hez, nag, suc
21. Domain for 2ny3:
  - Domain d2ny3b1: 2ny3 B:1001-1097 [138776]
    Other proteins in same PDB: d2ny3a1, d2ny3b2, d2ny3c1, d2ny3c2, d2ny3d1, d2ny3d2
    complexed with nag, suc
22. Domain for 2ny4:
  - Domain d2ny4b1: 2ny4 B:1001-1097 [138782]
    Other proteins in same PDB: d2ny4a1, d2ny4b2, d2ny4c1, d2ny4c2, d2ny4d1, d2ny4d2
    complexed with hez, nag, suc
23. Domain for 2ny5:
  - Domain d2ny5c1: 2ny5 C:1001-1097 [138788]
    Other proteins in same PDB: d2ny5c2, d2ny5g1, d2ny5h1, d2ny5h2, d2ny5l1, d2ny5l2
    complexed with nag, suc
24. Domain for 2ny6:
  - Domain d2ny6b1: 2ny6 B:1001-1097 [138794]
    Other proteins in same PDB: d2ny6a1, d2ny6b2, d2ny6c1, d2ny6c2, d2ny6d1, d2ny6d2
    complexed with nag, suc
25. Domains for 2qad:
  1. Domain d2qadb1: 2qad B:1-97 [150203]
    Other proteins in same PDB: d2qadb2, d2qadd1, d2qadd2, d2qadf2, d2qadh1, d2qadh2
    automatically matched to d1cdia1
    complexed with edo, mla, nag
  2. Domain d2qadf1: 2qad F:1-97 [150207]
    Other proteins in same PDB: d2qadb2, d2qadd1, d2qadd2, d2qadf2, d2qadh1, d2qadh2
    automatically matched to d1cdia1
    complexed with edo, mla, nag
26. Domain for 3cd4:
  - Domain d3cd4a1: 3cd4 A:1-97 [19720]
    Other proteins in same PDB: d3cd4a2
    domain 1
27. Domains for 3jwd:
  1. Domain d3jwdc1: 3jwd C:1000-1097 [232648]
    Other proteins in same PDB: d3jwdc2, d3jwdd2, d3jwdl1, d3jwdl2, d3jwdo1, d3jwdo2
    automated match to d2nxyb1
    complexed with gol, nag
  2. Domain d3jwdd1: 3jwd D:1001-1097 [232649]
    Other proteins in same PDB: d3jwdc2, d3jwdd2, d3jwdl1, d3jwdl2, d3jwdo1, d3jwdo2
    automated match to d2nxyb1
    complexed with gol, nag
28. Domain for 3o2d:
  - Domain d3o2da1: 3o2d A:1-97 [233059]
    Other proteins in same PDB: d3o2da2, d3o2dl1, d3o2dl2
    automated match to d3cd4a1
29. Domain for 4h8w:
  - Domain d4h8wc1: 4h8w C:1-97 [238359]
    Other proteins in same PDB: d4h8wc2, d4h8wl1, d4h8wl2
    automated match to d1g9mc1
    complexed with gol, mrd, nag
30. Domain for 4jm2:
  - Domain d4jm2f1: 4jm2 F:1-97 [252985]
    Other proteins in same PDB: d4jm2b1, d4jm2b2, d4jm2c1, d4jm2c2, d4jm2e_, d4jm2f2
    automated match to d2nxyb1
    complexed with nag, pg4
31. Domain for 4p9h:
  - Domain d4p9hc1: 4p9h C:2-97 [257449]
    Other proteins in same PDB: d4p9hc2, d4p9hl1, d4p9hl2
    automated match to d2nxyb1
    complexed with bam, epe, nag
Rat (Rattus rattus) [TaxId:10117] [48739] (1 PDB entry)
- Domain for 1cid:
  - Domain d1cida1: 1cid A:1-105 [19740]
    Other proteins in same PDB: d1cida2
    domain 3
    complexed with so4

More info for Protein CD4 V-set domains from b.1.1.1: V set domains (antibody variable domain-like)

Timeline for Protein CD4 V-set domains from b.1.1.1: V set domains (antibody variable domain-like):

Protein CD4 V-set domains from b.1.1.1: V set domains (antibody variable domain-like) first appeared (with stable ids) in SCOP 1.55, called Protein CD4 from b.1.1.1: V set domains (antibody variable domain-like)
Protein CD4 V-set domains from b.1.1.1: V set domains (antibody variable domain-like) appears in SCOPe 2.03
Protein CD4 V-set domains from b.1.1.1: V set domains (antibody variable domain-like) appears in SCOPe 2.05
Protein CD4 V-set domains from b.1.1.1: V set domains (antibody variable domain-like) appears in the current release, SCOPe 2.08