Lineage for Family a.123.1.1: Nuclear receptor ligand-binding domain

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2011944Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 2011945Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 2011946Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 proteins)

Proteins:

  1. 2011947Androgen receptor [63621] (4 species)
    1. 2011948Species Chimpanzee (Pan troglodytes) [TaxId:9598] [109986] (8 PDB entries)
      Uniprot O97775 661-910 # 100% sequence identity to human sequence (Uniprot P10275 669-918)
    2. 2011957Species Human (Homo sapiens) [TaxId:9606] [63623] (62 PDB entries)
      Uniprot P10275 671-919
    3. 2012023Species Mouse (Mus musculus) [TaxId:10090] [187213] (1 PDB entry)
    4. 2012025Species Norway rat (Rattus norvegicus) [TaxId:10116] [63622] (6 PDB entries)
  2. 2012032Bile acid receptor FXR [101433] (2 species)
    1. 2012033Species Human (Homo sapiens) [TaxId:9606] [101434] (8 PDB entries)
    2. 2012043Species Norway rat (Rattus norvegicus) [TaxId:10116] [101435] (2 PDB entries)
  3. 2012048Ecdysone receptor [101436] (1 species)
  4. 2012053Estrogen receptor alpha [48519] (1 species)
  5. 2012191Estrogen receptor beta [48521] (2 species)
    1. 2012192Species Human (Homo sapiens) [TaxId:9606] [48522] (26 PDB entries)
    2. 2012243Species Norway rat (Rattus norvegicus) [TaxId:10116] [48523] (2 PDB entries)
  6. 2012246Glucocorticoid receptor [89140] (1 species)
  7. 2012260Hepatocyte nuclear factor 4-alpha [109605] (2 species)
    1. 2012261Species Human (Homo sapiens) [TaxId:9606] [109987] (1 PDB entry)
      Uniprot P41235 139-369
    2. 2012263Species Norway rat (Rattus norvegicus) [TaxId:10116] [89146] (1 PDB entry)
  8. 2012268Hepatocyte nuclear factor 4-gamma [81918] (1 species)
  9. 2012271Nuclear hormone receptor HR38 [89144] (1 species)
  10. 2012275Orphan nuclear receptor ERR3 [81916] (1 species)
  11. 2012311Orphan nuclear receptor NR1I3 (CAR) [117014] (2 species)
    1. 2012312Species Human (Homo sapiens) [TaxId:9606] [117016] (2 PDB entries)
      Uniprot Q14994 103-352
    2. 2012317Species Mouse (Mus musculus) [TaxId:10090] [117015] (2 PDB entries)
      Uniprot O35627 109-358
  12. 2012324Orphan nuclear receptor NR4A1 [158811] (1 species)
  13. 2012358Orphan nuclear receptor NR5a2 (LRH-1) [89147] (1 species)
  14. 2012364Orphan nuclear receptor NURR1 [89142] (1 species)
  15. 2012372Orphan nuclear receptor ROR-alpha [81914] (1 species)
  16. 2012376Orphan nuclear receptor ROR-beta [74794] (1 species)
  17. 2012381Oxysterols receptor LXR-alpha [109988] (2 species)
    1. 2012382Species Human (Homo sapiens) [TaxId:9606] [109989] (1 PDB entry)
      Uniprot Q13133 207-445
    2. 2012384Species Mouse (Mus musculus) [TaxId:10090] [158810] (2 PDB entries)
      Uniprot Q9Z0Y9 203-443
  18. 2012391Oxysterols receptor LXR-beta [89149] (1 species)
  19. 2012409Peroxisome proliferator activated receptor alpha, PPAR-alpha [69109] (1 species)
  20. 2012438Peroxisome proliferator activated receptor gamma, PPAR-gamma [48524] (1 species)
  21. 2012645Peroxisome proliferator-activated receptor delta, PPAR-DELTA [48526] (1 species)
  22. 2012676Pregnane x receptor, PXR [63624] (1 species)
  23. 2012699Progesterone receptor [48517] (1 species)
  24. 2012719Retinoic acid receptor alpha (RAR-alpha) [48513] (1 species)
  25. 2012723Retinoic acid receptor beta (RAR-beta) [117011] (2 species)
    1. 2012724Species Human (Homo sapiens) [TaxId:9606] [117013] (2 PDB entries)
      Uniprot P10826 182-416
    2. 2012728Species Mouse (Mus musculus) [TaxId:10090] [117012] (1 PDB entry)
      Uniprot P22605 209-453
  26. 2012731Retinoic acid receptor gamma (RAR-gamma) [48515] (1 species)
  27. 2012742Retinoid-X receptor alpha (RXR-alpha) [48510] (2 species)
    1. 2012743Species Human (Homo sapiens) [TaxId:9606] [48511] (35 PDB entries)
      Uniprot P19793 227-458
    2. 2012807Species Mouse (Mus musculus) [TaxId:10090] [48512] (3 PDB entries)
      Uniprot P28700 232-463
  28. 2012812Retinoid-X receptor beta (RXR-beta) [74792] (1 species)
  29. 2012819Steroid hormone receptor ERR1 [109990] (1 species)
  30. 2012826Thyroid hormone receptor alpha1 (TR-alpha1) [48532] (1 species)
  31. 2012833Thyroid hormone receptor beta (TR-beta) [48530] (1 species)
  32. 2012854Ultraspiracle protein, usp [48534] (2 species)
    the ortholog of RXRs in insects
    1. 2012855Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [48535] (1 PDB entry)
    2. 2012862Species Tobacco budworm (Heliothis virescens) [TaxId:7102] [63626] (4 PDB entries)
  33. 2012867Vitamin D nuclear receptor [48528] (2 species)
    1. 2012868Species Human (Homo sapiens) [TaxId:9606] [48529] (28 PDB entries)
    2. 2012897Species Norway rat (Rattus norvegicus) [TaxId:10116] [101432] (15 PDB entries)
  34. 2012913automated matches [190059] (14 species)
    not a true protein
    1. 2012914Species Ancestral gene [230150] (1 PDB entry)
    2. 2012916Species Artificial gene [TaxId:32630] [189856] (1 PDB entry)
    3. 2012919Species Bemisia tabaci [TaxId:7038] [255003] (1 PDB entry)
    4. 2012921Species Biomphalaria glabrata [TaxId:6526] [188120] (1 PDB entry)
    5. 2012924Species Branchiostoma floridae [TaxId:7739] [188654] (1 PDB entry)
    6. 2012929Species Chicken (Gallus gallus) [TaxId:9031] [195567] (1 PDB entry)
    7. 2012931Species Cotton bollworm (Helicoverpa armigera) [TaxId:29058] [189564] (1 PDB entry)
    8. 2012933Species Escherichia coli [TaxId:469008] [189841] (1 PDB entry)
    9. 2012935Species Human (Homo sapiens) [TaxId:9606] [187214] (173 PDB entries)
    10. 2013248Species Mouse (Mus musculus) [TaxId:10090] [189464] (4 PDB entries)
    11. 2013254Species Norway rat (Rattus norvegicus) [TaxId:10116] [187147] (4 PDB entries)
    12. 2013259Species Pediculus humanus [TaxId:121224] [258056] (2 PDB entries)
    13. 2013263Species Tobacco budworm (Heliothis virescens) [TaxId:7102] [187215] (1 PDB entry)
    14. 2013265Species Tribolium castaneum [TaxId:7070] [188215] (1 PDB entry)

More info for Family a.123.1.1: Nuclear receptor ligand-binding domain

Timeline for Family a.123.1.1: Nuclear receptor ligand-binding domain: