SCOPe 2.06: Family a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domain

Lineage for Family a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domain

1. Root: SCOPe 2.06

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.80: post-AAA+ oligomerization domain-like [48018] (1 superfamily)
   core: 5 helices: bundle

4. Superfamily a.80.1: post-AAA+ oligomerization domain-like [48019] (2 families)
   associated with N-terminal domain from the AAA+ family of P-loop hydrolases

5. Family a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domain [48020] (9 proteins)
   contains an extra helix

Proteins:

1. delta prime subunit [48021] (1 species)

   • Species Escherichia coli [TaxId:562] [48022] (4 PDB entries)
     Uniprot P28631

2. delta subunit [63580] (1 species)

   • Species Escherichia coli [TaxId:562] [63581] (4 PDB entries)
     Uniprot P28630

3. gamma subunit [63578] (2 species)

   1. Species Escherichia coli [TaxId:562] [63579] (3 PDB entries)
      Uniprot P06710 5-368

   2. Species Thermotoga maritima [TaxId:2336] [140678] (1 PDB entry)
      Uniprot Q9WZM9 209-306

4. Replication factor C [63582] (1 species)

   • Species Pyrococcus furiosus [TaxId:2261] [63583] (1 PDB entry)

5. Replication factor C1 [109894] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [109895] (1 PDB entry)
     Uniprot P38630 295-696 # helical segment (667-696) together with unassigned C-terminal sequence forms an all-alpha subdomain

6. Replication factor C2 [109900] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [109901] (1 PDB entry)
     Uniprot P40348

7. Replication factor C3 [109898] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [109899] (1 PDB entry)
     Uniprot P38629

8. Replication factor C4 [109896] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [109897] (1 PDB entry)
     Uniprot P40339

9. Replication factor C5 [109902] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [109903] (1 PDB entry)
     Uniprot P38251

More info for Family a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domain

Timeline for Family a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domain:

• Family a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domain first appeared (with stable ids) in SCOP 1.55, called Family a.80.1.1: delta prime subunit of DNA polymerase III, C-domain
  
• Family a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domain appears in SCOPe 2.05
  
• Family a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domain appears in SCOPe 2.07
  
• Family a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domain appears in the current release, SCOPe 2.08