SCOPe 2.08: Protein: Flap endonuclease-1 (Fen-1 nuclease)

Lineage for Protein: Flap endonuclease-1 (Fen-1 nuclease)

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.60: SAM domain-like [47768] (17 superfamilies)
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily a.60.7: 5' to 3' exonuclease, C-terminal subdomain [47807] (2 families)
Family a.60.7.1: 5' to 3' exonuclease, C-terminal subdomain [47808] (4 proteins)
Protein Flap endonuclease-1 (Fen-1 nuclease) [47815] (5 species)

Species:

Archaeoglobus fulgidus [TaxId:2234] [101255] (2 PDB entries)
1. Domains for 1rxv:
  1. Domain d1rxva1: 1rxv A:220-323 [98055]
    Other proteins in same PDB: d1rxva2, d1rxvb2
    protein/DNA complex
  2. Domain d1rxvb1: 1rxv B:220-323 [98057]
    Other proteins in same PDB: d1rxva2, d1rxvb2
    protein/DNA complex
2. Domain for 1rxw:
  - Domain d1rxwa1: 1rxw A:220-324 [98059]
    Other proteins in same PDB: d1rxwa2
    protein/DNA complex

Human (Homo sapiens) [TaxId:9606] [140638] (1 PDB entry)
Uniprot P39748 218-357

Domains for 1ul1:

Domain d1ul1x1: 1ul1 X:218-357 [119690]
Other proteins in same PDB: d1ul1a1, d1ul1a2, d1ul1b1, d1ul1b2, d1ul1c1, d1ul1c2, d1ul1x2, d1ul1y2, d1ul1z2
protein/DNA complex; complexed with mg

Domain d1ul1y1: 1ul1 Y:218-359 [119692]
Other proteins in same PDB: d1ul1a1, d1ul1a2, d1ul1b1, d1ul1b2, d1ul1c1, d1ul1c2, d1ul1x2, d1ul1y2, d1ul1z2
automated match to d1ul1x1
protein/DNA complex; complexed with mg

Domain d1ul1z1: 1ul1 Z:218-356 [119694]
Other proteins in same PDB: d1ul1a1, d1ul1a2, d1ul1b1, d1ul1b2, d1ul1c1, d1ul1c2, d1ul1x2, d1ul1y2, d1ul1z2
automated match to d1ul1x1
protein/DNA complex; complexed with mg

Methanococcus jannaschii [TaxId:2190] [47816] (2 PDB entries)
1. Domain for 1a76:
  - Domain d1a76a1: 1a76 A:209-316 [18091]
    Other proteins in same PDB: d1a76a2
    complexed with mn
2. Domain for 1a77:
  - Domain d1a77a1: 1a77 A:209-316 [18090]
    Other proteins in same PDB: d1a77a2
    complexed with mg
Pyrococcus furiosus [TaxId:2261] [47818] (1 PDB entry)
- Domains for 1b43:
  1. Domain d1b43a1: 1b43 A:220-339 [18092]
    Other proteins in same PDB: d1b43a2, d1b43b2
  2. Domain d1b43b1: 1b43 B:220-339 [18093]
    Other proteins in same PDB: d1b43a2, d1b43b2
Pyrococcus horikoshii [TaxId:53953] [81798] (1 PDB entry)
- Domains for 1mc8:
  1. Domain d1mc8a1: 1mc8 A:221-332 [78945]
    Other proteins in same PDB: d1mc8a2, d1mc8b2
    mutant
  2. Domain d1mc8b1: 1mc8 B:221-332 [78947]
    Other proteins in same PDB: d1mc8a2, d1mc8b2
    mutant

More info for Protein Flap endonuclease-1 (Fen-1 nuclease) from a.60.7.1: 5' to 3' exonuclease, C-terminal subdomain

Timeline for Protein Flap endonuclease-1 (Fen-1 nuclease) from a.60.7.1: 5' to 3' exonuclease, C-terminal subdomain:

Protein Flap endonuclease-1 (Fen-1 nuclease) from a.60.7.1: 5' to 3' exonuclease, C-terminal subdomain first appeared (with stable ids) in SCOP 1.55, called Protein Flap endonuclease-1 from a.60.7.1: 5' to 3' exonuclease, C-terminal subdomain
Protein Flap endonuclease-1 (Fen-1 nuclease) from a.60.7.1: 5' to 3' exonuclease, C-terminal subdomain appears in SCOPe 2.07