SCOP 1.65: Protein: DNA polymerase beta, N-terminal (8 kD)-domain

Lineage for Protein: DNA polymerase beta, N-terminal (8 kD)-domain

Root: SCOP 1.65
Class a: All alpha proteins [46456] (179 folds)
Fold a.60: SAM domain-like [47768] (13 superfamilies)
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily a.60.6: DNA polymerase beta, N-terminal domain-like [47802] (1 family)
contains one classic and one pseudo HhH motifs
Family a.60.6.1: DNA polymerase beta, N-terminal domain-like [47803] (2 proteins)
Protein DNA polymerase beta, N-terminal (8 kD)-domain [47804] (2 species)
topologically similar to the second domain

Species:

Human (Homo sapiens) [TaxId:9606] [47805] (92 PDB entries)
1. Domain for 1bpx:
  - Domain d1bpxa1: 1bpx A:5-91 [18060]
    Other proteins in same PDB: d1bpxa3, d1bpxa4
    protein/DNA complex; complexed with na
2. Domain for 1bpy:
  - Domain d1bpya1: 1bpy A:10-91 [17980]
    Other proteins in same PDB: d1bpya3, d1bpya4
    protein/DNA complex; complexed with dct, doc, mg, na
3. Domain for 1bpz:
  - Domain d1bpza1: 1bpz A:5-91 [18058]
    Other proteins in same PDB: d1bpza3, d1bpza4
    protein/DNA complex; complexed with na
4. Domain for 1mq2:
  - Domain d1mq2a1: 1mq2 A:10-91 [79394]
    Other proteins in same PDB: d1mq2a2, d1mq2a3
    complexed with 2da, 8og, a, na
5. Domain for 1mq3:
  - Domain d1mq3a1: 1mq3 A:10-91 [79397]
    Other proteins in same PDB: d1mq3a2, d1mq3a3
    complexed with 8og, dcp, doc, mg, na
6. Domain for 1zqa:
  - Domain d1zqaa1: 1zqa A:9-91 [17981]
    Other proteins in same PDB: d1zqaa3, d1zqaa4
    protein/DNA complex; complexed with k
7. Domain for 1zqb:
  - Domain d1zqba1: 1zqb A:9-91 [18018]
    Other proteins in same PDB: d1zqba3, d1zqba4
    protein/DNA complex; complexed with ba
8. Domain for 1zqc:
  - Domain d1zqca1: 1zqc A:9-91 [18051]
    Other proteins in same PDB: d1zqca3, d1zqca4
    protein/DNA complex; complexed with ca
9. Domain for 1zqd:
  - Domain d1zqda1: 1zqd A:9-91 [18052]
    Other proteins in same PDB: d1zqda3, d1zqda4
    protein/DNA complex; complexed with ca
10. Domain for 1zqe:
  - Domain d1zqea1: 1zqe A:9-91 [18065]
    Other proteins in same PDB: d1zqea3, d1zqea4
    protein/DNA complex; complexed with cr
11. Domain for 1zqf:
  - Domain d1zqfa1: 1zqf A:9-91 [18035]
    Other proteins in same PDB: d1zqfa3, d1zqfa4
    protein/DNA complex; complexed with cs
12. Domain for 1zqg:
  - Domain d1zqga1: 1zqg A:9-91 [18032]
    Other proteins in same PDB: d1zqga3, d1zqga4
    protein/DNA complex; complexed with na
13. Domain for 1zqh:
  - Domain d1zqha1: 1zqh A:9-91 [18069]
    Other proteins in same PDB: d1zqha3, d1zqha4
    protein/DNA complex; complexed with na
14. Domain for 1zqi:
  - Domain d1zqia1: 1zqi A:9-91 [17990]
    Other proteins in same PDB: d1zqia3, d1zqia4
    protein/DNA complex; complexed with k
15. Domain for 1zqj:
  - Domain d1zqja1: 1zqj A:9-91 [18068]
    Other proteins in same PDB: d1zqja3, d1zqja4
    protein/DNA complex; complexed with ca
16. Domain for 1zqk:
  - Domain d1zqka1: 1zqk A:9-91 [18019]
    Other proteins in same PDB: d1zqka3, d1zqka4
    protein/DNA complex; complexed with k
17. Domain for 1zql:
  - Domain d1zqla1: 1zql A:9-91 [18053]
    Other proteins in same PDB: d1zqla3, d1zqla4
    protein/DNA complex; complexed with mn
18. Domain for 1zqm:
  - Domain d1zqma1: 1zqm A:9-91 [18033]
    Other proteins in same PDB: d1zqma3, d1zqma4
    protein/DNA complex; complexed with mn
19. Domain for 1zqn:
  - Domain d1zqna1: 1zqn A:9-91 [18034]
    Other proteins in same PDB: d1zqna3, d1zqna4
    protein/DNA complex; complexed with ba
20. Domain for 1zqo:
  - Domain d1zqoa1: 1zqo A:9-91 [18043]
    Other proteins in same PDB: d1zqoa3, d1zqoa4
    protein/DNA complex; complexed with na
21. Domain for 1zqp:
  - Domain d1zqpa1: 1zqp A:9-91 [17991]
    Other proteins in same PDB: d1zqpa3, d1zqpa4
    protein/DNA complex; complexed with k
22. Domain for 1zqq:
  - Domain d1zqqa1: 1zqq A:9-91 [18054]
    Other proteins in same PDB: d1zqqa3, d1zqqa4
    protein/DNA complex; complexed with mn, na
23. Domain for 1zqr:
  - Domain d1zqra1: 1zqr A:9-91 [18066]
    Other proteins in same PDB: d1zqra3, d1zqra4
    protein/DNA complex; complexed with na, ni
24. Domain for 1zqs:
  - Domain d1zqsa1: 1zqs A:9-91 [18055]
    Other proteins in same PDB: d1zqsa3, d1zqsa4
    protein/DNA complex; complexed with na
25. Domain for 1zqt:
  - Domain d1zqta1: 1zqt A:9-91 [18064]
    Other proteins in same PDB: d1zqta3, d1zqta4
    protein/DNA complex; complexed with na, zn
26. Domain for 7ice:
  - Domain d7icea1: 7ice A:9-91 [17987]
    Other proteins in same PDB: d7icea3, d7icea4
    protein/DNA complex; complexed with na
27. Domain for 7icf:
  - Domain d7icfa1: 7icf A:9-91 [18031]
    Other proteins in same PDB: d7icfa3, d7icfa4
    protein/DNA complex; complexed with cd, na
28. Domain for 7icg:
  - Domain d7icga1: 7icg A:9-91 [18017]
    Other proteins in same PDB: d7icga3, d7icga4
    protein/DNA complex; complexed with na
29. Domain for 7ich:
  - Domain d7icha1: 7ich A:9-91 [18000]
    Other proteins in same PDB: d7icha3, d7icha4
    protein/DNA complex; complexed with na
30. Domain for 7ici:
  - Domain d7icia1: 7ici A:9-91 [17986]
    Other proteins in same PDB: d7icia3, d7icia4
    protein/DNA complex; complexed with na
31. Domain for 7icj:
  - Domain d7icja1: 7icj A:9-91 [18063]
    Other proteins in same PDB: d7icja3, d7icja4
    protein/DNA complex; complexed with cu, na
32. Domain for 7ick:
  - Domain d7icka1: 7ick A:9-91 [17993]
    Other proteins in same PDB: d7icka3, d7icka4
    protein/DNA complex; complexed with na
33. Domain for 7icl:
  - Domain d7icla1: 7icl A:9-91 [18020]
    Other proteins in same PDB: d7icla3, d7icla4
    protein/DNA complex; complexed with na
34. Domain for 7icm:
  - Domain d7icma1: 7icm A:9-91 [18009]
    Other proteins in same PDB: d7icma3, d7icma4
    protein/DNA complex; complexed with na
35. Domain for 7icn:
  - Domain d7icna1: 7icn A:9-91 [17988]
    Other proteins in same PDB: d7icna3, d7icna4
    protein/DNA complex; complexed with na
36. Domain for 7ico:
  - Domain d7icoa1: 7ico A:9-91 [18044]
    Other proteins in same PDB: d7icoa3, d7icoa4
    protein/DNA complex; complexed with na, zn
37. Domain for 7icp:
  - Domain d7icpa1: 7icp A:9-91 [18005]
    Other proteins in same PDB: d7icpa3, d7icpa4
    protein/DNA complex; complexed with na, zn
38. Domain for 7icq:
  - Domain d7icqa1: 7icq A:9-91 [18002]
    Other proteins in same PDB: d7icqa3, d7icqa4
    protein/DNA complex; complexed with na, zn
39. Domain for 7icr:
  - Domain d7icra1: 7icr A:9-91 [18016]
    Other proteins in same PDB: d7icra3, d7icra4
    protein/DNA complex; complexed with na, zn
40. Domain for 7ics:
  - Domain d7icsa1: 7ics A:9-91 [18036]
    Other proteins in same PDB: d7icsa3, d7icsa4
    protein/DNA complex; complexed with na
41. Domain for 7ict:
  - Domain d7icta1: 7ict A:9-91 [18003]
    Other proteins in same PDB: d7icta3, d7icta4
    protein/DNA complex; complexed with na, zn
42. Domain for 7icu:
  - Domain d7icua1: 7icu A:9-91 [18056]
    Other proteins in same PDB: d7icua3, d7icua4
    protein/DNA complex; complexed with cd, na
43. Domain for 7icv:
  - Domain d7icva1: 7icv A:9-91 [17992]
    Other proteins in same PDB: d7icva3, d7icva4
    protein/DNA complex; complexed with na
44. Domain for 8ica:
  - Domain d8icaa1: 8ica A:9-91 [18021]
    Other proteins in same PDB: d8icaa3, d8icaa4
    protein/DNA complex; complexed with ca, dtp, na
45. Domain for 8icb:
  - Domain d8icba1: 8icb A:9-91 [18022]
    Other proteins in same PDB: d8icba3, d8icba4
    protein/DNA complex; complexed with na
46. Domain for 8icc:
  - Domain d8icca1: 8icc A:9-91 [17997]
    Other proteins in same PDB: d8icca3, d8icca4
    protein/DNA complex; complexed with na
47. Domain for 8ice:
  - Domain d8icea1: 8ice A:9-91 [18057]
    Other proteins in same PDB: d8icea3, d8icea4
    protein/DNA complex; complexed with cd, dtp, na
48. Domain for 8icf:
  - Domain d8icfa1: 8icf A:9-91 [18037]
    Other proteins in same PDB: d8icfa3, d8icfa4
    protein/DNA complex; complexed with dtp, na
49. Domain for 8icg:
  - Domain d8icga1: 8icg A:9-91 [18038]
    Other proteins in same PDB: d8icga3, d8icga4
    protein/DNA complex; complexed with na
50. Domain for 8ich:
  - Domain d8icha1: 8ich A:9-91 [18062]
    Other proteins in same PDB: d8icha3, d8icha4
    protein/DNA complex; complexed with na
51. Domain for 8ici:
  - Domain d8icia1: 8ici A:9-91 [17998]
    Other proteins in same PDB: d8icia3, d8icia4
    protein/DNA complex; complexed with mg, na
52. Domain for 8icj:
  - Domain d8icja1: 8icj A:9-91 [18045]
    Other proteins in same PDB: d8icja3, d8icja4
    protein/DNA complex; complexed with na, ttp
53. Domain for 8ick:
  - Domain d8icka1: 8ick A:9-91 [17989]
    Other proteins in same PDB: d8icka3, d8icka4
    protein/DNA complex; complexed with dtp, mn, na
54. Domain for 8icl:
  - Domain d8icla1: 8icl A:9-91 [18039]
    Other proteins in same PDB: d8icla3, d8icla4
    protein/DNA complex; complexed with dtp, na, ni
55. Domain for 8icm:
  - Domain d8icma1: 8icm A:9-91 [18023]
    Other proteins in same PDB: d8icma3, d8icma4
    protein/DNA complex; complexed with na, so4
56. Domain for 8icn:
  - Domain d8icna1: 8icn A:9-91 [17999]
    Other proteins in same PDB: d8icna3, d8icna4
    protein/DNA complex; complexed with atp, mn, na
57. Domain for 8ico:
  - Domain d8icoa1: 8ico A:9-91 [17983]
    Other proteins in same PDB: d8icoa3, d8icoa4
    protein/DNA complex; complexed with azt, mn, na
58. Domain for 8icp:
  - Domain d8icpa1: 8icp A:9-91 [18006]
    Other proteins in same PDB: d8icpa3, d8icpa4
    protein/DNA complex; complexed with dtp, mn, na
59. Domain for 8icq:
  - Domain d8icqa1: 8icq A:9-91 [18015]
    Other proteins in same PDB: d8icqa3, d8icqa4
    protein/DNA complex; complexed with na
60. Domain for 8icr:
  - Domain d8icra1: 8icr A:9-91 [18007]
    Other proteins in same PDB: d8icra3, d8icra4
    protein/DNA complex; complexed with dtp, mn, na
61. Domain for 8ics:
  - Domain d8icsa1: 8ics A:9-91 [18008]
    Other proteins in same PDB: d8icsa3, d8icsa4
    protein/DNA complex; complexed with dcp, mn, na
62. Domain for 8ict:
  - Domain d8icta1: 8ict A:9-91 [18046]
    Other proteins in same PDB: d8icta3, d8icta4
    protein/DNA complex; complexed with dcp, mn, na
63. Domain for 8icu:
  - Domain d8icua1: 8icu A:9-91 [18040]
    Other proteins in same PDB: d8icua3, d8icua4
    protein/DNA complex; complexed with dad, mn, na
64. Domain for 8icv:
  - Domain d8icva1: 8icv A:9-91 [18047]
    Other proteins in same PDB: d8icva3, d8icva4
    protein/DNA complex; complexed with dgt, mn, na
65. Domain for 8icw:
  - Domain d8icwa1: 8icw A:9-91 [18061]
    Other proteins in same PDB: d8icwa3, d8icwa4
    protein/DNA complex; complexed with mn, na, ttp
66. Domain for 8icx:
  - Domain d8icxa1: 8icx A:9-91 [18024]
    Other proteins in same PDB: d8icxa3, d8icxa4
    protein/DNA complex; complexed with mn, na, ttp
67. Domain for 8icy:
  - Domain d8icya1: 8icy A:9-91 [18048]
    Other proteins in same PDB: d8icya3, d8icya4
    protein/DNA complex; complexed with mn, na, ttp
68. Domain for 8icz:
  - Domain d8icza1: 8icz A:9-91 [18025]
    Other proteins in same PDB: d8icza3, d8icza4
    protein/DNA complex; complexed with na, so4
69. Domain for 9ica:
  - Domain d9icaa1: 9ica A:9-91 [18026]
    Other proteins in same PDB: d9icaa3, d9icaa4
    protein/DNA complex; complexed with mn, stp
70. Domain for 9icb:
  - Domain d9icba1: 9icb A:9-91 [18041]
    Other proteins in same PDB: d9icba3, d9icba4
    protein/DNA complex; complexed with co, dtp, na
71. Domain for 9icc:
  - Domain d9icca1: 9icc A:9-91 [18042]
    Other proteins in same PDB: d9icca3, d9icca4
    protein/DNA complex; complexed with cr, dtp, na
72. Domain for 9ice:
  - Domain d9icea1: 9ice A:9-91 [18067]
    Other proteins in same PDB: d9icea3, d9icea4
    protein/DNA complex; complexed with na
73. Domain for 9icf:
  - Domain d9icfa1: 9icf A:9-91 [18027]
    Other proteins in same PDB: d9icfa3, d9icfa4
    protein/DNA complex; complexed with dtp, na, zn
74. Domain for 9icg:
  - Domain d9icga1: 9icg A:9-91 [18028]
    Other proteins in same PDB: d9icga3, d9icga4
    protein/DNA complex; complexed with dcp, na, zn
75. Domain for 9ich:
  - Domain d9icha1: 9ich A:9-91 [18029]
    Other proteins in same PDB: d9icha3, d9icha4
    protein/DNA complex; complexed with dgt, na, zn
76. Domain for 9ici:
  - Domain d9icia1: 9ici A:9-91 [18049]
    Other proteins in same PDB: d9icia3, d9icia4
    protein/DNA complex; complexed with na, zn
77. Domain for 9icj:
  - Domain d9icja1: 9icj A:9-91 [18030]
    Other proteins in same PDB: d9icja3, d9icja4
    protein/DNA complex; complexed with na, so4
78. Domain for 9ick:
  - Domain d9icka1: 9ick A:9-91 [17984]
    Other proteins in same PDB: d9icka3, d9icka4
    protein/DNA complex; complexed with na
79. Domain for 9icl:
  - Domain d9icla1: 9icl A:9-91 [17994]
    Other proteins in same PDB: d9icla3, d9icla4
    protein/DNA complex; complexed with mn, na
80. Domain for 9icm:
  - Domain d9icma1: 9icm A:9-91 [18001]
    Other proteins in same PDB: d9icma3, d9icma4
    protein/DNA complex; complexed with na
81. Domain for 9icn:
  - Domain d9icna1: 9icn A:9-91 [18004]
    Other proteins in same PDB: d9icna3, d9icna4
    protein/DNA complex; complexed with dct, mg, na
82. Domain for 9ico:
  - Domain d9icoa1: 9ico A:9-91 [17995]
    Other proteins in same PDB: d9icoa3, d9icoa4
    protein/DNA complex; complexed with na
83. Domain for 9icp:
  - Domain d9icpa1: 9icp A:9-91 [18059]
    Other proteins in same PDB: d9icpa3, d9icpa4
    protein/DNA complex; complexed with na
84. Domain for 9icq:
  - Domain d9icqa1: 9icq A:9-91 [18010]
    Other proteins in same PDB: d9icqa3, d9icqa4
    protein/DNA complex; complexed with dtp, mn, na
85. Domain for 9icr:
  - Domain d9icra1: 9icr A:9-91 [18011]
    Other proteins in same PDB: d9icra3, d9icra4
    protein/DNA complex; complexed with dcp, mn, na
86. Domain for 9ics:
  - Domain d9icsa1: 9ics A:9-91 [18012]
    Other proteins in same PDB: d9icsa3, d9icsa4
    protein/DNA complex; complexed with dct, mn, na
87. Domain for 9ict:
  - Domain d9icta1: 9ict A:9-91 [18013]
    Other proteins in same PDB: d9icta3, d9icta4
    protein/DNA complex; complexed with dgt, mn, na
88. Domain for 9icu:
  - Domain d9icua1: 9icu A:9-91 [18014]
    Other proteins in same PDB: d9icua3, d9icua4
    protein/DNA complex; complexed with mn, na, ttp
89. Domain for 9icv:
  - Domain d9icva1: 9icv A:9-91 [17996]
    Other proteins in same PDB: d9icva3, d9icva4
    protein/DNA complex; complexed with dtp, na, zn
90. Domain for 9icw:
  - Domain d9icwa1: 9icw A:9-91 [17982]
    Other proteins in same PDB: d9icwa3, d9icwa4
    protein/DNA complex; complexed with na, so4
91. Domain for 9icx:
  - Domain d9icxa1: 9icx A:9-91 [17985]
    Other proteins in same PDB: d9icxa3, d9icxa4
    protein/DNA complex; complexed with na
92. Domain for 9icy:
  - Domain d9icya1: 9icy A:9-91 [18050]
    Other proteins in same PDB: d9icya3, d9icya4
    protein/DNA complex; complexed with na, so4
Rat (Rattus norvegicus) [TaxId:10116] [47806] (10 PDB entries)
1. Domain for 1bno:
  - Domain d1bno__: 1bno - [18079]
2. Domain for 1bnp:
  - Domain d1bnp__: 1bnp - [18080]
3. Domain for 1bpd:
  - Domain d1bpd_1: 1bpd 9-91 [18073]
    Other proteins in same PDB: d1bpd_3, d1bpd_4
    complexed with po4
4. Domain for 1bpe:
  - Domain d1bpe_1: 1bpe 12-91 [18076]
    Other proteins in same PDB: d1bpe_3, d1bpe_4
    partly disordered
    complexed with dtp
5. Domain for 1dk2:
  - Domain d1dk2a_: 1dk2 A: [18078]
6. Domain for 1dk3:
  - Domain d1dk3a_: 1dk3 A: [18077]
7. Domains for 1huo:
  1. Domain d1huoa1: 1huo A:10-91 [61273]
    Other proteins in same PDB: d1huoa3, d1huoa4, d1huob3, d1huob4
  2. Domain d1huob1: 1huo B:10-91 [61275]
    Other proteins in same PDB: d1huoa3, d1huoa4, d1huob3, d1huob4
    complexed with cr, tte
8. Domains for 1huz:
  1. Domain d1huza1: 1huz A:10-91 [61281]
    Other proteins in same PDB: d1huza3, d1huza4, d1huzb3, d1huzb4
  2. Domain d1huzb1: 1huz B:10-91 [61283]
    Other proteins in same PDB: d1huza3, d1huza4, d1huzb3, d1huzb4
    complexed with cr, mdn
9. Domain for 2bpf:
  - Domain d2bpfa1: 2bpf A:9-91 [18070]
    Other proteins in same PDB: d2bpfa3, d2bpfa4
    protein/DNA complex; complexed with dct, mg
10. Domains for 2bpg:
  1. Domain d2bpga1: 2bpg A:9-91 [18074]
    Other proteins in same PDB: d2bpga3, d2bpga4, d2bpgb3, d2bpgb4
  2. Domain d2bpgb1: 2bpg B:9-91 [18075]
    Other proteins in same PDB: d2bpga3, d2bpga4, d2bpgb3, d2bpgb4
    protein/DNA complex; complexed with dct, mg

More info for Protein DNA polymerase beta, N-terminal (8 kD)-domain from a.60.6.1: DNA polymerase beta, N-terminal domain-like

Timeline for Protein DNA polymerase beta, N-terminal (8 kD)-domain from a.60.6.1: DNA polymerase beta, N-terminal domain-like:

Protein DNA polymerase beta, N-terminal (8 kD)-domain from a.60.6.1: DNA polymerase beta, N-terminal domain-like first appeared (with stable ids) in SCOP 1.55, called Protein DNA polymerase beta, N-terminal (8 kD)-domain from a.60.6.1: DNA polymerase beta, N-terminal (8 kD)-domain
Protein DNA polymerase beta, N-terminal (8 kD)-domain from a.60.6.1: DNA polymerase beta, N-terminal domain-like appears in SCOP 1.63
Protein DNA polymerase beta, N-terminal (8 kD)-domain from a.60.6.1: DNA polymerase beta, N-terminal domain-like appears in SCOP 1.67
Protein DNA polymerase beta, N-terminal (8 kD)-domain from a.60.6.1: DNA polymerase beta, N-terminal domain-like appears in the current release, SCOPe 2.08