Lineage for Protein: HIV capsid protein, dimerisation domain

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2316392Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
    4 helices, bundle; helix 3 is shorter than others; up-and-down
  4. 2316654Superfamily a.28.3: Retrovirus capsid dimerization domain-like [47353] (3 families) (S)
  5. 2316655Family a.28.3.1: Retrovirus capsid protein C-terminal domain [47354] (5 proteins)
  6. 2316661Protein HIV capsid protein, dimerisation domain [47359] (3 species)

Species:

  1. 2316662Human immunodeficiency virus type 1 group m subtype b (isolate ny5) [TaxId:11698] [346174] (1 PDB entry)
  2. 2316665Human immunodeficiency virus type 1 [TaxId:11676] [47360] (15 PDB entries)
    1. Domain for 1a43:
    2. Domain for 1a8o:
    3. Domain for 1aum:
    4. Domain for 1baj:
      • 2316676Domain d1baja_: 1baj A: [16954]
        extended at the C-terminus to include a 14-residue GAG p2 domain
    5. Domain for 1e6j:
    6. Domain for 2jo0:
    7. Domain for 2jyg:
    8. Domain for 2jyl:
    9. Domain for 2k1c:
    10. Domain for 2ont:
    11. Domain for 3dik:
    12. Domains for 3dph:
      1. 2316673Domain d3dpha_: 3dph A: [209254]
        automated match to d1baja_
        mutant
      2. 2316674Domain d3dphb_: 3dph B: [209255]
        automated match to d1baja_
        mutant
    13. Domains for 3ds2:
      1. 2316666Domain d3ds2a_: 3ds2 A: [209283]
        automated match to d1baja_
        mutant
      2. 2316667Domain d3ds2b_: 3ds2 B: [209284]
        automated match to d1baja_
        mutant
    14. Domains for 3ds5:
      1. 2316678Domain d3ds5a_: 3ds5 A: [209285]
        automated match to d1baja_
        mutant
      2. 2316679Domain d3ds5b_: 3ds5 B: [209286]
        automated match to d1baja_
        mutant
      3. 2316680Domain d3ds5c_: 3ds5 C: [209287]
        automated match to d1baja_
        mutant
      4. 2316681Domain d3ds5d_: 3ds5 D: [209288]
        automated match to d1baja_
        mutant
    15. Domains for 4ipy:
      1. 2316669Domain d4ipya_: 4ipy A: [228330]
        automated match to d1a43a_
        complexed with edo
      2. 2316670Domain d4ipyb_: 4ipy B: [228332]
        automated match to d1a43a_
        complexed with edo
      3. 2316671Domain d4ipyc_: 4ipy C: [228333]
        automated match to d1a43a_
        complexed with edo
      4. 2316672Domain d4ipyd_: 4ipy D: [228331]
        automated match to d1a43a_
        complexed with edo
  3. 3061113Human immunodeficiency virus 1 [TaxId:11676] [361175] (2 PDB entries)
    1. Domains for 6n3j:
      1. 3061114Domain d6n3jc_: 6n3j C: [361176]
        automated match to d5teob_
      2. 3061119Domain d6n3jb_: 6n3j B: [361181]
        automated match to d5teob_
      3. 3061129Domain d6n3je_: 6n3j E: [361191]
        automated match to d5teob_
      4. 3061130Domain d6n3jf_: 6n3j F: [361192]
        automated match to d5teob_
      5. 3061142Domain d6n3jd_: 6n3j D: [361204]
        automated match to d5teob_
      6. 3061167Domain d6n3ja_: 6n3j A: [361229]
        automated match to d5teob_
    2. Domains for 6n3u:
      1. 3061120Domain d6n3ue_: 6n3u E: [361182]
        automated match to d5teob_
      2. 3061127Domain d6n3uc_: 6n3u C: [361189]
        automated match to d5teob_
      3. 3061128Domain d6n3ub_: 6n3u B: [361190]
        automated match to d5teob_
      4. 3061145Domain d6n3uf_: 6n3u F: [361207]
        automated match to d5teob_
      5. 3061160Domain d6n3ua_: 6n3u A: [361222]
        automated match to d5teob_
      6. 3061181Domain d6n3ud_: 6n3u D: [361243]
        automated match to d5teob_

More info for Protein HIV capsid protein, dimerisation domain from a.28.3.1: Retrovirus capsid protein C-terminal domain

Timeline for Protein HIV capsid protein, dimerisation domain from a.28.3.1: Retrovirus capsid protein C-terminal domain: