Lineage for Family a.25.1.1: Ferritin

  1. Root: SCOPe 2.02
  2. 1074916Class a: All alpha proteins [46456] (284 folds)
  3. 1084172Fold a.25: Ferritin-like [47239] (6 superfamilies)
    core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection
  4. 1084173Superfamily a.25.1: Ferritin-like [47240] (10 families) (S)
    contains bimetal-ion centre in the middle of the bundle
  5. 1084174Family a.25.1.1: Ferritin [47241] (10 proteins)

Proteins:

  1. 1084175(Apo)ferritin [47246] (8 species)
    1. 1084176Species Bullfrog (Rana catesbeiana) [TaxId:8400] [47249] (7 PDB entries)
    2. 1084207Species Cabbage looper (Trichoplusia ni), H chain [TaxId:7111] [140437] (1 PDB entry)
      Uniprot Q8WQX3 21-211
    3. 1084209Species Cabbage looper (Trichoplusia ni), L chain [TaxId:7111] [140436] (1 PDB entry)
      Uniprot Q52SA8 1-200
    4. 1084211Species Horse (Equus caballus), L chain [TaxId:9796] [47248] (45 PDB entries)
    5. 1084262Species Human (Homo sapiens) [TaxId:9606] [187702] (3 PDB entries)
    6. 1084273Species Human (Homo sapiens), H chain [TaxId:9606] [47247] (2 PDB entries)
    7. 1084276Species Human (Homo sapiens), mitocondial isoform [TaxId:9606] [109785] (1 PDB entry)
      Uniprot Q8N4E7
    8. 1084278Species Mouse (Mus musculus) [TaxId:10090] [63526] (2 PDB entries)
  2. 1084281Bacterioferritin (cytochrome b1) [47244] (5 species)
    binds heme between two subunits; 24-mer
    1. 1084282Species Azotobacter vinelandii [TaxId:354] [140431] (1 PDB entry)
      Uniprot P22759 1-155
    2. 1084284Species Desulfovibrio desulfuricans [TaxId:876] [89025] (3 PDB entries)
    3. 1084333Species Escherichia coli K-12 [TaxId:83333] [188868] (3 PDB entries)
    4. 1084360Species Escherichia coli [TaxId:562] [47245] (11 PDB entries)
    5. 1084501Species Rhodobacter capsulatus [TaxId:1061] [69004] (1 PDB entry)
  3. 1084505Dodecameric ferritin homolog [47250] (14 species)
    1. 1084506Species Agrobacterium tumefaciens, Dps [TaxId:358] [89027] (1 PDB entry)
    2. 1084513Species Bacillus anthracis, Dlp-1 [TaxId:1392] [74705] (1 PDB entry)
    3. 1084518Species Bacillus anthracis, Dlp-2 [TaxId:1392] [74706] (1 PDB entry)
    4. 1084523Species Bacillus brevis, Dps [TaxId:1393] [89026] (1 PDB entry)
    5. 1084528Species Escherichia coli, Dps [TaxId:562] [47251] (7 PDB entries)
      ferritin homolog that binds to and protects DNA
    6. 1084625Species Halobacterium salinarum [TaxId:2242] [101135] (5 PDB entries)
      Uniprot Q9HMP7
    7. 1084646Species Helicobacter pylori, Nap [TaxId:210] [81743] (1 PDB entry)
    8. 1084659Species Lactococcus lactis, DpsA [TaxId:1358] [140434] (1 PDB entry)
      Uniprot A2RLG8 6-173
    9. 1084664Species Lactococcus lactis, DpsB [TaxId:1358] [140433] (1 PDB entry)
      Uniprot A2RJ45 3-173
    10. 1084677Species Listeria innocua [TaxId:1642] [47252] (4 PDB entries)
    11. 1084693Species Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [188558] (1 PDB entry)
    12. 1084698Species Mycobacterium smegmatis [TaxId:1772] [109784] (5 PDB entries)
      Uniprot Q8VP75
    13. 1084731Species Streptococcus suis [TaxId:1307] [101134] (8 PDB entries)
    14. 1084828Species Treponema pallidum, TpF1 [TaxId:160] [140435] (1 PDB entry)
      Uniprot P16665 26-176
  4. 1084830Hypothetical protein PF1190 [140438] (1 species)
    significant sequence similarity to the half-ferritin family
  5. 1084834Hypothetical protein TM1526 [101132] (1 species)
  6. 1084837Hypothetical rubrerythrin [101130] (1 species)
  7. 1084841Nigerythrin, N-terminal domain [140440] (1 species)
  8. 1084849Non-hem ferritin [63524] (5 species)
    1. 1084850Species Archaeoglobus fulgidus [TaxId:2234] [140432] (1 PDB entry)
      Uniprot O29424 3-164
    2. 1084852Species Campylobacter jejuni [TaxId:197] [69005] (1 PDB entry)
    3. 1084854Species Escherichia coli, FtnA [TaxId:562] [63525] (1 PDB entry)
    4. 1084861Species Pseudo-nitzschia multiseries [TaxId:37319] [188675] (3 PDB entries)
    5. 1084876Species Thermotoga maritima [TaxId:2336] [109783] (1 PDB entry)
      Uniprot Q9X0L2
  9. 1084885Rubrerythrin, N-terminal domain [47242] (2 species)
    1. 1084886Species Desulfovibrio vulgaris [TaxId:881] [47243] (10 PDB entries)
      Uniprot P24931
    2. 1084897Species Pyrococcus furiosus [TaxId:2261] [101129] (2 PDB entries)
  10. 1084902automated matches [190041] (21 species)
    not a true protein
    1. 1084903Species Archaeoglobus fulgidus [TaxId:2234] [189565] (1 PDB entry)
    2. 1084928Species Azotobacter vinelandii [TaxId:354] [186762] (3 PDB entries)
    3. 1084952Species Blastochloris viridis [TaxId:1079] [193423] (1 PDB entry)
    4. 1084954Species Brucella melitensis [TaxId:29459] [188807] (1 PDB entry)
    5. 1084967Species Bullfrog (Rana catesbeiana) [TaxId:8400] [189485] (9 PDB entries)
    6. 1084977Species Burkholderia pseudomallei [TaxId:320372] [196065] (1 PDB entry)
    7. 1084979Species Helicobacter pylori [TaxId:210] [188725] (5 PDB entries)
    8. 1085010Species Helicobacter pylori [TaxId:85963] [188967] (1 PDB entry)
    9. 1085017Species Horse (Equus caballus) [TaxId:9796] [187199] (6 PDB entries)
    10. 1085024Species Human (Homo sapiens) [TaxId:9606] [187027] (14 PDB entries)
    11. 1085050Species Listeria innocua [TaxId:1642] [186977] (3 PDB entries)
    12. 1085090Species Listeria monocytogenes [TaxId:1639] [187885] (1 PDB entry)
    13. 1085115Species Mycobacterium smegmatis [TaxId:1772] [186784] (1 PDB entry)
    14. 1085120Species Pseudomonas aeruginosa [TaxId:287] [189215] (2 PDB entries)
    15. 1085123Species Rhodobacter sphaeroides [TaxId:272943] [189145] (1 PDB entry)
    16. 1085127Species Salmonella enterica [TaxId:439842] [189595] (2 PDB entries)
    17. 1085130Species Streptococcus suis [TaxId:1307] [187539] (1 PDB entry)
    18. 1085143Species Thermotoga maritima [TaxId:243274] [188168] (1 PDB entry)
    19. 1085152Species Trichoplusia ni [TaxId:7111] [188170] (1 PDB entry)
    20. 1085164Species Vibrio cholerae [TaxId:243277] [189679] (1 PDB entry)
    21. 1085168Species Yersinia pestis [TaxId:187410] [195837] (1 PDB entry)

More info for Family a.25.1.1: Ferritin

Timeline for Family a.25.1.1: Ferritin: