Lineage for Family a.25.1.1: Ferritin

  1. Root: SCOPe 2.08
  2. 2685877Class a: All alpha proteins [46456] (290 folds)
  3. 2700837Fold a.25: Ferritin-like [47239] (6 superfamilies)
    core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection
  4. 2700838Superfamily a.25.1: Ferritin-like [47240] (10 families) (S)
    contains bimetal-ion centre in the middle of the bundle
  5. 2700839Family a.25.1.1: Ferritin [47241] (10 proteins)

Proteins:

  1. 2700840(Apo)ferritin [47246] (8 species)
    1. 2700841Species Bullfrog (Rana catesbeiana) [TaxId:8400] [47249] (21 PDB entries)
    2. 2700894Species Cabbage looper (Trichoplusia ni), H chain [TaxId:7111] [140437] (1 PDB entry)
      Uniprot Q8WQX3 21-211
    3. 2700896Species Cabbage looper (Trichoplusia ni), L chain [TaxId:7111] [140436] (1 PDB entry)
      Uniprot Q52SA8 1-200
    4. 2700898Species Horse (Equus caballus), L chain [TaxId:9796] [47248] (81 PDB entries)
    5. 2701031Species Human (Homo sapiens) [TaxId:9606] [187702] (9 PDB entries)
    6. 2701140Species Human (Homo sapiens), H chain [TaxId:9606] [47247] (45 PDB entries)
    7. 2701401Species Human (Homo sapiens), mitocondial isoform [TaxId:9606] [109785] (1 PDB entry)
      Uniprot Q8N4E7
    8. 2701403Species Mouse (Mus musculus) [TaxId:10090] [63526] (2 PDB entries)
  2. 2701406Bacterioferritin (cytochrome b1) [47244] (6 species)
    binds heme between two subunits; 24-mer
    1. 2701407Species Azotobacter vinelandii [TaxId:354] [140431] (1 PDB entry)
      Uniprot P22759 1-155
    2. 2701409Species Desulfovibrio desulfuricans [TaxId:876] [89025] (3 PDB entries)
    3. 2701458Species Escherichia coli K-12 [TaxId:83333] [188868] (9 PDB entries)
    4. 2701557Species Escherichia coli [TaxId:199310] [268908] (1 PDB entry)
    5. 2701570Species Escherichia coli [TaxId:562] [47245] (11 PDB entries)
    6. 2701711Species Rhodobacter capsulatus [TaxId:1061] [69004] (1 PDB entry)
  3. 2701715Dodecameric ferritin homolog [47250] (16 species)
    1. 2701716Species Agrobacterium tumefaciens, Dps [TaxId:358] [89027] (1 PDB entry)
    2. 2701723Species Bacillus anthracis, Dlp-1 [TaxId:1392] [74705] (1 PDB entry)
    3. 2701728Species Bacillus anthracis, Dlp-2 [TaxId:1392] [74706] (1 PDB entry)
    4. 2701733Species Bacillus brevis, Dps [TaxId:1393] [89026] (1 PDB entry)
    5. 2701738Species Escherichia coli [TaxId:83333] [368371] (2 PDB entries)
    6. 2701766Species Escherichia coli, Dps [TaxId:562] [47251] (8 PDB entries)
      ferritin homolog that binds to and protects DNA
    7. 2701875Species Halobacterium salinarum [TaxId:2242] [101135] (5 PDB entries)
      Uniprot Q9HMP7
    8. 2701896Species Helicobacter pylori, Nap [TaxId:210] [81743] (7 PDB entries)
    9. 2701915Species Lactococcus lactis, DpsA [TaxId:1358] [140434] (1 PDB entry)
      Uniprot A2RLG8 6-173
    10. 2701920Species Lactococcus lactis, DpsB [TaxId:1358] [140433] (1 PDB entry)
      Uniprot A2RJ45 3-173
    11. 2701933Species Listeria innocua [TaxId:1642] [47252] (7 PDB entries)
    12. 2701967Species Listeria innocua [TaxId:272626] [373578] (2 PDB entries)
    13. 2701980Species Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [188558] (1 PDB entry)
    14. 2701985Species Mycobacterium smegmatis [TaxId:1772] [109784] (5 PDB entries)
      Uniprot Q8VP75
    15. 2702018Species Streptococcus suis [TaxId:1307] [101134] (8 PDB entries)
    16. 2702115Species Treponema pallidum, TpF1 [TaxId:160] [140435] (1 PDB entry)
      Uniprot P16665 26-176
  4. 2702117Hypothetical protein PF1190 [140438] (1 species)
    significant sequence similarity to the half-ferritin family
  5. 2702121Hypothetical protein TM1526 [101132] (1 species)
  6. 2702124Hypothetical rubrerythrin [101130] (1 species)
  7. 2702128Nigerythrin, N-terminal domain [140440] (1 species)
  8. 2702136Non-hem ferritin [63524] (7 species)
    1. 2702137Species Archaeoglobus fulgidus [TaxId:2234] [140432] (1 PDB entry)
      Uniprot O29424 3-164
    2. 2702139Species Campylobacter jejuni [TaxId:197] [69005] (1 PDB entry)
    3. 2702141Species Escherichia coli [TaxId:1110693] [260578] (1 PDB entry)
    4. 2702148Species Escherichia coli [TaxId:83333] [319417] (1 PDB entry)
    5. 2702155Species Escherichia coli, FtnA [TaxId:562] [63525] (1 PDB entry)
    6. 2702162Species Pseudo-nitzschia multiseries [TaxId:37319] [188675] (9 PDB entries)
    7. 2702229Species Thermotoga maritima [TaxId:2336] [109783] (1 PDB entry)
      Uniprot Q9X0L2
  9. 2702238Rubrerythrin, N-terminal domain [47242] (2 species)
    1. 2702239Species Desulfovibrio vulgaris [TaxId:881] [47243] (10 PDB entries)
      Uniprot P24931
    2. 2702250Species Pyrococcus furiosus [TaxId:2261] [101129] (2 PDB entries)
  10. 2702255automated matches [190041] (33 species)
    not a true protein
    1. 2702256Species Archaeoglobus fulgidus [TaxId:2234] [189565] (1 PDB entry)
    2. 2702281Species Azotobacter vinelandii [TaxId:354] [186762] (3 PDB entries)
    3. 2702305Species Blastochloris viridis [TaxId:1079] [193423] (3 PDB entries)
    4. 2702312Species Brucella melitensis [TaxId:29459] [188807] (1 PDB entry)
    5. 2702325Species Bullfrog (Rana catesbeiana) [TaxId:8400] [189485] (19 PDB entries)
    6. 2702451Species Burkholderia pseudomallei [TaxId:320372] [196065] (1 PDB entry)
    7. 2702454Species Crassostrea gigas [TaxId:29159] [397195] (1 PDB entry)
    8. 2702456Species Escherichia coli [TaxId:536056] [318611] (1 PDB entry)
    9. 2702463Species Escherichia coli [TaxId:562] [259060] (4 PDB entries)
    10. 2702468Species Escherichia coli [TaxId:83333] [348468] (1 PDB entry)
    11. 2702479Species Escherichia coli [TaxId:83334] [357648] (1 PDB entry)
    12. 2702486Species Helicobacter pylori [TaxId:210] [188725] (5 PDB entries)
    13. 2702517Species Helicobacter pylori [TaxId:85963] [188967] (2 PDB entries)
    14. 2702536Species Horse (Equus caballus) [TaxId:9796] [187199] (6 PDB entries)
    15. 2702543Species Human (Homo sapiens) [TaxId:9606] [187027] (12 PDB entries)
    16. 2702568Species Listeria innocua [TaxId:1642] [186977] (3 PDB entries)
    17. 2702608Species Listeria monocytogenes [TaxId:1639] [187885] (1 PDB entry)
    18. 2702633Species Lithobates catesbeiana [TaxId:8400] [323613] (9 PDB entries)
    19. 2702643Species Mouse (Mus musculus) [TaxId:10090] [355187] (7 PDB entries)
    20. 2702771Species Mycobacterium smegmatis [TaxId:1772] [186784] (1 PDB entry)
    21. 2702776Species Mycobacterium smegmatis [TaxId:246196] [338474] (1 PDB entry)
    22. 2702778Species Phascolosoma esculenta [TaxId:419950] [399640] (2 PDB entries)
    23. 2702789Species Pseudomonas aeruginosa [TaxId:287] [189215] (23 PDB entries)
    24. 2703138Species Pyrococcus furiosus [TaxId:2261] [232940] (4 PDB entries)
    25. 2703159Species Rhodobacter sphaeroides [TaxId:272943] [189145] (1 PDB entry)
    26. 2703163Species Salmonella enterica [TaxId:439842] [189595] (2 PDB entries)
    27. 2703188Species Streptococcus suis [TaxId:1307] [187539] (1 PDB entry)
    28. 2703201Species Streptomyces coelicolor [TaxId:1902] [256737] (1 PDB entry)
    29. 2703203Species Thermotoga maritima [TaxId:2336] [399745] (2 PDB entries)
    30. 2703216Species Thermotoga maritima [TaxId:243274] [188168] (8 PDB entries)
    31. 2703281Species Trichoplusia ni [TaxId:7111] [188170] (1 PDB entry)
    32. 2703293Species Vibrio cholerae [TaxId:243277] [189679] (1 PDB entry)
    33. 2703297Species Yersinia pestis [TaxId:187410] [195837] (1 PDB entry)

More info for Family a.25.1.1: Ferritin

Timeline for Family a.25.1.1: Ferritin: