Class a: All alpha proteins [46456] (284 folds) |
Fold a.22: Histone-fold [47112] (1 superfamily) core: 3 helices; long middle helix is flanked at each end with shorter ones |
Superfamily a.22.1: Histone-fold [47113] (4 families) |
Family a.22.1.1: Nucleosome core histones [47114] (6 proteins) form octamers composed of two copies of each of the four histones |
Protein Histone H2B [47119] (6 species) |
African clawed frog (Xenopus laevis) [TaxId:8355] [47121] (35 PDB entries) |
Domain d1aoid_: 1aoi D: [16452] Other proteins in same PDB: d1aoia_, d1aoib_, d1aoic_, d1aoie_, d1aoif_, d1aoig_ protein/DNA complex; complexed with mn |
Domain d1aoih_: 1aoi H: [16453] Other proteins in same PDB: d1aoia_, d1aoib_, d1aoic_, d1aoie_, d1aoif_, d1aoig_ protein/DNA complex; complexed with mn |
Domain d1f66d_: 1f66 D: [16450] Other proteins in same PDB: d1f66a_, d1f66b_, d1f66c_, d1f66e_, d1f66f_, d1f66g_ protein/DNA complex; complexed with mn |
Domain d1f66h_: 1f66 H: [16451] Other proteins in same PDB: d1f66a_, d1f66b_, d1f66c_, d1f66e_, d1f66f_, d1f66g_ protein/DNA complex; complexed with mn |
Domain d1kx3d_: 1kx3 D: [77580] Other proteins in same PDB: d1kx3a_, d1kx3b_, d1kx3c_, d1kx3e_, d1kx3f_, d1kx3g_ protein/DNA complex; complexed with mn |
Domain d1kx3h_: 1kx3 H: [77584] Other proteins in same PDB: d1kx3a_, d1kx3b_, d1kx3c_, d1kx3e_, d1kx3f_, d1kx3g_ protein/DNA complex; complexed with mn |
Domain d1kx4d_: 1kx4 D: [77588] Other proteins in same PDB: d1kx4a_, d1kx4b_, d1kx4c_, d1kx4e_, d1kx4f_, d1kx4g_ protein/DNA complex; complexed with cl, mn |
Domain d1kx4h_: 1kx4 H: [77592] Other proteins in same PDB: d1kx4a_, d1kx4b_, d1kx4c_, d1kx4e_, d1kx4f_, d1kx4g_ protein/DNA complex; complexed with cl, mn |
Domain d1kx5d_: 1kx5 D: [77596] Other proteins in same PDB: d1kx5a_, d1kx5b_, d1kx5c_, d1kx5e_, d1kx5f_, d1kx5g_ protein/DNA complex; complexed with cl, mn |
Domain d1kx5h_: 1kx5 H: [77600] Other proteins in same PDB: d1kx5a_, d1kx5b_, d1kx5c_, d1kx5e_, d1kx5f_, d1kx5g_ protein/DNA complex; complexed with cl, mn |
Domain d1m18d_: 1m18 D: [78374] Other proteins in same PDB: d1m18a_, d1m18b_, d1m18c_, d1m18e_, d1m18f_, d1m18g_ protein/DNA complex; complexed with abu, imt, mn |
Domain d1m18h_: 1m18 H: [78378] Other proteins in same PDB: d1m18a_, d1m18b_, d1m18c_, d1m18e_, d1m18f_, d1m18g_ protein/DNA complex; complexed with abu, imt, mn |
Domain d1m19d_: 1m19 D: [78382] Other proteins in same PDB: d1m19a_, d1m19b_, d1m19c_, d1m19e_, d1m19f_, d1m19g_ protein/DNA complex; complexed with imt, mn |
Domain d1m19h_: 1m19 H: [78386] Other proteins in same PDB: d1m19a_, d1m19b_, d1m19c_, d1m19e_, d1m19f_, d1m19g_ protein/DNA complex; complexed with imt, mn |
Domain d1m1ad_: 1m1a D: [78390] Other proteins in same PDB: d1m1aa_, d1m1ab_, d1m1ac_, d1m1ae_, d1m1af_, d1m1ag_ protein/DNA complex; complexed with imt, mn |
Domain d1m1ah_: 1m1a H: [78394] Other proteins in same PDB: d1m1aa_, d1m1ab_, d1m1ac_, d1m1ae_, d1m1af_, d1m1ag_ protein/DNA complex; complexed with imt, mn |
Domain d1s32d_: 1s32 D: [98415] Other proteins in same PDB: d1s32a_, d1s32b_, d1s32c_, d1s32e_, d1s32f_, d1s32g_ protein/DNA complex; complexed with cl, imt, mn, ogg |
Domain d1s32h_: 1s32 H: [98419] Other proteins in same PDB: d1s32a_, d1s32b_, d1s32c_, d1s32e_, d1s32f_, d1s32g_ protein/DNA complex; complexed with cl, imt, mn, ogg |
Domain d1zlad_: 1zla D: [125243] Other proteins in same PDB: d1zlaa_, d1zlab_, d1zlac1, d1zlae_, d1zlaf_, d1zlag_ automated match to d1kx5d_ protein/DNA complex |
Domain d1zlah_: 1zla H: [125247] Other proteins in same PDB: d1zlaa_, d1zlab_, d1zlac1, d1zlae_, d1zlaf_, d1zlag_ automated match to d1kx5d_ protein/DNA complex |
Domain d2fj7d1: 2fj7 D:30-122 [133550] Other proteins in same PDB: d2fj7a1, d2fj7b1, d2fj7e1, d2fj7f1 automatically matched to d1s32d_ protein/DNA complex |
Domain d2fj7h1: 2fj7 H:30-122 [133553] Other proteins in same PDB: d2fj7a1, d2fj7b1, d2fj7e1, d2fj7f1 automatically matched to d1s32d_ protein/DNA complex |
Domain d2nzdd_: 2nzd D: [191677] Other proteins in same PDB: d2nzda_, d2nzdb_, d2nzdc_, d2nzde_, d2nzdf_, d2nzdg_ automated match to d1kx5d_ protein/DNA complex; complexed with mn |
Domain d2nzdh_: 2nzd H: [191678] Other proteins in same PDB: d2nzda_, d2nzdb_, d2nzdc_, d2nzde_, d2nzdf_, d2nzdg_ automated match to d1kx5d_ protein/DNA complex; complexed with mn |
Domain d3b6fd1: 3b6f D:22-122 [154887] Other proteins in same PDB: d3b6fa1, d3b6fb1, d3b6fc1, d3b6fe1, d3b6ff1, d3b6fg1 automatically matched to d1s32d_ protein/DNA complex; complexed with mn |
Domain d3b6fh1: 3b6f H:24-122 [154891] Other proteins in same PDB: d3b6fa1, d3b6fb1, d3b6fc1, d3b6fe1, d3b6ff1, d3b6fg1 automatically matched to d1s32d_ protein/DNA complex; complexed with mn |
Domain d3b6gd1: 3b6g D:22-122 [154895] Other proteins in same PDB: d3b6ga1, d3b6gb1, d3b6gc1, d3b6ge1, d3b6gf1, d3b6gg1 automatically matched to d1s32d_ protein/DNA complex; complexed with mn |
Domain d3b6gh1: 3b6g H:24-122 [154899] Other proteins in same PDB: d3b6ga1, d3b6gb1, d3b6gc1, d3b6ge1, d3b6gf1, d3b6gg1 automatically matched to d1s32d_ protein/DNA complex; complexed with mn |
Domain d3kuyd_: 3kuy D: [191750] Other proteins in same PDB: d3kuya_, d3kuyb_, d3kuyc_, d3kuye_, d3kuyf_, d3kuyg_ automated match to d1kx5d_ protein/DNA complex; complexed with atv, mn |
Domain d3kuyh_: 3kuy H: [191752] Other proteins in same PDB: d3kuya_, d3kuyb_, d3kuyc_, d3kuye_, d3kuyf_, d3kuyg_ automated match to d1kx5d_ protein/DNA complex; complexed with atv, mn |
Domain d3leld_: 3lel D: [191756] Other proteins in same PDB: d3lela_, d3lelb_, d3lelc_, d3lele_, d3lelf_, d3lelg_, d3lelk_, d3lell_, d3lelm_, d3lelo_, d3lelp_, d3lelq_ automated match to d1kx5d_ protein/DNA complex; complexed with mn |
Domain d3lelh_: 3lel H: [191759] Other proteins in same PDB: d3lela_, d3lelb_, d3lelc_, d3lele_, d3lelf_, d3lelg_, d3lelk_, d3lell_, d3lelm_, d3lelo_, d3lelp_, d3lelq_ automated match to d1kx5d_ protein/DNA complex; complexed with mn |
Domain d3leln_: 3lel N: [191762] Other proteins in same PDB: d3lela_, d3lelb_, d3lelc_, d3lele_, d3lelf_, d3lelg_, d3lelk_, d3lell_, d3lelm_, d3lelo_, d3lelp_, d3lelq_ automated match to d1kx5d_ protein/DNA complex; complexed with mn |
Domain d3lelr_: 3lel R: [191765] Other proteins in same PDB: d3lela_, d3lelb_, d3lelc_, d3lele_, d3lelf_, d3lelg_, d3lelk_, d3lell_, d3lelm_, d3lelo_, d3lelp_, d3lelq_ automated match to d1kx5d_ protein/DNA complex; complexed with mn |
Domain d3ljad_: 3lja D: [191767] Other proteins in same PDB: d3ljaa_, d3ljab_, d3ljae_, d3ljaf_ automated match to d1kx5d_ protein/DNA complex; complexed with mn, so4 |
Domain d3ljah_: 3lja H: [191769] Other proteins in same PDB: d3ljaa_, d3ljab_, d3ljae_, d3ljaf_ automated match to d1kx5d_ protein/DNA complex; complexed with mn, so4 |
Domain d3mgpd_: 3mgp D: [191774] Other proteins in same PDB: d3mgpa_, d3mgpb_, d3mgpc_, d3mgpe_, d3mgpf_, d3mgpg_ automated match to d1kx5d_ protein/DNA complex; complexed with cl, co |
Domain d3mgph_: 3mgp H: [191776] Other proteins in same PDB: d3mgpa_, d3mgpb_, d3mgpc_, d3mgpe_, d3mgpf_, d3mgpg_ automated match to d1kx5d_ protein/DNA complex; complexed with cl, co |
Domain d3mgqd_: 3mgq D: [191778] Other proteins in same PDB: d3mgqa_, d3mgqb_, d3mgqc_, d3mgqe_, d3mgqf_, d3mgqg_ automated match to d1kx5d_ protein/DNA complex; complexed with cl, ni |
Domain d3mgqh_: 3mgq H: [191780] Other proteins in same PDB: d3mgqa_, d3mgqb_, d3mgqc_, d3mgqe_, d3mgqf_, d3mgqg_ automated match to d1kx5d_ protein/DNA complex; complexed with cl, ni |
Domain d3mgrd_: 3mgr D: [191782] Other proteins in same PDB: d3mgra_, d3mgrb_, d3mgrc_, d3mgre_, d3mgrf_, d3mgrg_ automated match to d1kx5d_ protein/DNA complex; complexed with cl, mn, rb |
Domain d3mgrh_: 3mgr H: [191784] Other proteins in same PDB: d3mgra_, d3mgrb_, d3mgrc_, d3mgre_, d3mgrf_, d3mgrg_ automated match to d1kx5d_ protein/DNA complex; complexed with cl, mn, rb |
Domain d3mnnd_: 3mnn D: [191786] Other proteins in same PDB: d3mnna_, d3mnnb_, d3mnnc_, d3mnne_, d3mnnf_, d3mnng_ automated match to d1kx5d_ protein/DNA complex; complexed with mg, mml, ptw, ru, so4 |
Domain d3mnnh_: 3mnn H: [191788] Other proteins in same PDB: d3mnna_, d3mnnb_, d3mnnc_, d3mnne_, d3mnnf_, d3mnng_ automated match to d1kx5d_ protein/DNA complex; complexed with mg, mml, ptw, ru, so4 |
Baker's yeast (Saccharomyces cerevisiae), H2B.2 [TaxId:4932] [68985] (2 PDB entries) |
Domain d1id3d_: 1id3 D: [66115] Other proteins in same PDB: d1id3a_, d1id3b_, d1id3c_, d1id3e_, d1id3f_, d1id3g_ protein/DNA complex; complexed with mn |
Domain d1id3h_: 1id3 H: [66119] Other proteins in same PDB: d1id3a_, d1id3b_, d1id3c_, d1id3e_, d1id3f_, d1id3g_ protein/DNA complex; complexed with mn |
Domain d2jssa2: 2jss A:1-95 [148193] Other proteins in same PDB: d2jssa1 automatically matched to d1id3h_ |
Chicken (Gallus gallus), erythrocytes [TaxId:9031] [47120] (6 PDB entries) Uniprot P02279 |
Domain d1eqzb_: 1eqz B: [16446] Other proteins in same PDB: d1eqza_, d1eqzc_, d1eqzd_, d1eqze_, d1eqzg_, d1eqzh_ protein/DNA complex; complexed with cac, cl, k, mn |
Domain d1eqzf_: 1eqz F: [16447] Other proteins in same PDB: d1eqza_, d1eqzc_, d1eqzd_, d1eqze_, d1eqzg_, d1eqzh_ protein/DNA complex; complexed with cac, cl, k, mn |
Domain d1hiob_: 1hio B: [16449] Other proteins in same PDB: d1hioa_, d1hioc_, d1hiod_ |
Domain d2arob_: 2aro B: [127210] Other proteins in same PDB: d2aroa_, d2aroc_, d2arod_, d2aroe_, d2arog_, d2aroh_ automated match to d1kx5d_ complexed with cl, po4 |
Domain d2arof_: 2aro F: [127214] Other proteins in same PDB: d2aroa_, d2aroc_, d2arod_, d2aroe_, d2arog_, d2aroh_ automated match to d1kx5d_ complexed with cl, po4 |
Domain d2hiob_: 2hio B: [16448] Other proteins in same PDB: d2hioa_, d2hioc_, d2hiod_ |
Human (Homo sapiens), H2B.k [TaxId:9606] [140394] (1 PDB entry) Uniprot O60814 30-125 |
Domain d2cv5d1: 2cv5 D:27-122 [130850] Other proteins in same PDB: d2cv5a_, d2cv5b_, d2cv5c1, d2cv5e_, d2cv5f_, d2cv5g_ protein/DNA complex; complexed with cl, mn |
Domain d2cv5h_: 2cv5 H: [130854] Other proteins in same PDB: d2cv5a_, d2cv5b_, d2cv5c1, d2cv5e_, d2cv5f_, d2cv5g_ automated match to d1kx5d_ protein/DNA complex; complexed with cl, mn |
Mouse (Mus musculus), H2Ba [TaxId:10090] [140393] (2 PDB entries) Uniprot Q9D2U9 34-126 |
Domain d1u35d1: 1u35 D:1230-1322 [119496] Other proteins in same PDB: d1u35a1, d1u35b1, d1u35c1, d1u35e1, d1u35f1, d1u35g1 protein/DNA complex |
Domain d1u35h1: 1u35 H:1430-1522 [119500] Other proteins in same PDB: d1u35a1, d1u35b1, d1u35c1, d1u35e1, d1u35f1, d1u35g1 automatically matched to 1U35 D:1230-1322 protein/DNA complex |
Xenopus (Silurana) tropicalis [TaxId:8364] [158385] (2 PDB entries) |
Domain d3c1bd_: 3c1b D: [155854] Other proteins in same PDB: d3c1ba_, d3c1bb_, d3c1bc_, d3c1be_, d3c1bf_, d3c1bg_ automated match to d1kx5d_ protein/DNA complex |
Domain d3c1bh_: 3c1b H: [155858] Other proteins in same PDB: d3c1ba_, d3c1bb_, d3c1bc_, d3c1be_, d3c1bf_, d3c1bg_ automated match to d1kx5d_ protein/DNA complex |
Domain d3c1cd1: 3c1c D:1230-1322 [155861] Other proteins in same PDB: d3c1cb1, d3c1cc1, d3c1cf1, d3c1cg1 automatically matched to d1s32d_ protein/DNA complex |
Domain d3c1ch1: 3c1c H:1429-1520 [155864] Other proteins in same PDB: d3c1cb1, d3c1cc1, d3c1cf1, d3c1cg1 automatically matched to d1s32d_ protein/DNA complex |
Timeline for Protein Histone H2B from a.22.1.1: Nucleosome core histones: