Lineage for Family a.3.1.1: monodomain cytochrome c

  1. Root: SCOPe 2.01
  2. 901761Class a: All alpha proteins [46456] (284 folds)
  3. 904708Fold a.3: Cytochrome c [46625] (1 superfamily)
    core: 3 helices; folded leaf, opened
  4. 904709Superfamily a.3.1: Cytochrome c [46626] (9 families) (S)
    covalently-bound heme completes the core
  5. 904710Family a.3.1.1: monodomain cytochrome c [46627] (16 proteins)

Proteins:

  1. 904711Cytochrome c'' [68950] (1 species)
    close homologue of SHP
  2. 904718Cytochrome c-L (MoxG) [109645] (1 species)
  3. 904721Cytochrome c2 [46650] (8 species)
    1. 904722Species Paracoccus denitrificans [TaxId:266] [46657] (2 PDB entries)
    2. 904725Species Rhodobacter capsulatus [TaxId:1061] [46652] (3 PDB entries)
      Uniprot P00094
    3. 904731Species Rhodobacter sphaeroides [TaxId:1063] [46653] (5 PDB entries)
    4. 904739Species Rhodopila globiformis [TaxId:1071] [46656] (1 PDB entry)
    5. 904742Species Rhodopseudomonas palustris [TaxId:1076] [46655] (4 PDB entries)
    6. 904753Species Rhodopseudomonas viridis [TaxId:1079] [46654] (3 PDB entries)
    7. 904757Species Rhodospirillum centenum [TaxId:34018] [68947] (1 PDB entry)
    8. 904759Species Rhodospirillum rubrum [TaxId:1085] [46651] (2 PDB entries)
  4. 904762Cytochrome c5 [46658] (1 species)
  5. 904765Cytochrome c550 [100991] (1 species)
  6. 904769Cytochrome c551 [46660] (4 species)
    1. 904770Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] [46664] (1 PDB entry)
    2. 904772Species Paracoccus denitrificans [TaxId:266] [46663] (5 PDB entries)
    3. 904790Species Pseudomonas aeruginosa [TaxId:287] [46662] (4 PDB entries)
    4. 904795Species Pseudomonas stutzeri [TaxId:316] [46661] (3 PDB entries)
  7. 904799Cytochrome c552 [46636] (5 species)
    1. 904800Species Hydrogenobacter thermophilus [TaxId:940] [46640] (3 PDB entries)
    2. 904807Species Nitrosomonas europaea [TaxId:915] [46641] (2 PDB entries)
    3. 904810Species Paracoccus denitrificans [TaxId:266] [46639] (5 PDB entries)
    4. 904822Species Pseudomonas nautica [TaxId:2743] [46638] (1 PDB entry)
    5. 904831Species Thermus thermophilus [TaxId:274] [46637] (6 PDB entries)
      Uniprot P04164
  8. 904839Cytochrome c6 (synonym: cytochrome c553) [46628] (10 species)
    1. 904840Species Arthrospira maxima [TaxId:129910] [63457] (2 PDB entries)
    2. 904850Species Bacillus pasteurii [TaxId:1474] [46629] (5 PDB entries)
    3. 904856Species Desulfovibrio desulfuricans [TaxId:876] [46632] (1 PDB entry)
    4. 904858Species Desulfovibrio vulgaris, different strains [TaxId:881] [46631] (2 PDB entries)
    5. 904861Species Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [46633] (2 PDB entries)
    6. 904864Species Green alga (Cladophora glomerata) [TaxId:162068] [81674] (1 PDB entry)
    7. 904866Species Green alga (Scenedesmus obliquus) [TaxId:3088] [46635] (2 PDB entries)
    8. 904870Species Monoraphidium braunii [TaxId:34112] [46630] (3 PDB entries)
    9. 904874Species Red alga (Porphyra yezoensis) [TaxId:2788] [63458] (1 PDB entry)
    10. 904876Species Synechococcus elongatus [TaxId:32046] [46634] (1 PDB entry)
  9. 904878Cytochrome ch [46648] (1 species)
  10. 904883Mitochondrial cytochrome c [46642] (6 species)
    1. 904884Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [46643] (45 PDB entries)
      Uniprot P00044
    2. 904935Species Bluefin tuna (Thunnus thynnus) [TaxId:8237] [46646] (5 PDB entries)
      identical sequence to Thunnus alalunga, TaxId: 8235
    3. 904945Species Bonito (Katsuwonus pelamis) [TaxId:8226] [46647] (1 PDB entry)
    4. 904948Species Horse (Equus caballus) [TaxId:9796] [46644] (20 PDB entries)
      Uniprot P00004
    5. 904982Species Human (Homo sapiens) [TaxId:9606] [109644] (2 PDB entries)
      Uniprot P99999
    6. 904988Species Rice embryos (Oryza sativa) [TaxId:4530] [46645] (1 PDB entry)
  11. 904990Mono-heme c-type cytochrome ScyA [68948] (1 species)
  12. 904994Mono-heme c-type cytochrome SoxX [81675] (1 species)
  13. 905006p-Cresol methylhydroxylase, cytochrome c subunit [46669] (1 species)
    the other subunit is a flavoprotein
  14. 905012Photosystem II associated cytochrome c549 [63459] (2 species)
    1. 905013Species Arthrospira maxima [TaxId:129910] [63461] (1 PDB entry)
    2. 905016Species Synechocystis sp. PCC 6803 [TaxId:1148] [63460] (1 PDB entry)
  15. 905018SHP, an oxygen binding cytochrome c [46667] (1 species)
  16. 905032automated matches [190113] (11 species)
    not a true protein
    1. 905033Species Cow (Bos taurus) [TaxId:9913] [187444] (1 PDB entry)
    2. 905035Species Crithidia fasciculata [TaxId:5656] [189994] (1 PDB entry)
    3. 905039Species Hizikia fusiformis [TaxId:74103] [188620] (1 PDB entry)
    4. 905046Species Mouse (Mus musculus) [TaxId:10090] [187404] (1 PDB entry)
    5. 905048Species Paracoccus versutus [TaxId:34007] [187457] (3 PDB entries)
    6. 905052Species Phaeodactylum tricornutum [TaxId:2850] [188813] (1 PDB entry)
    7. 905054Species Phormidium laminosum [TaxId:32059] [187369] (2 PDB entries)
    8. 905058Species Pseudomonas aeruginosa [TaxId:287] [187678] (1 PDB entry)
    9. 905061Species Pseudomonas putida [TaxId:303] [186836] (1 PDB entry)
    10. 905064Species Thermosynechococcus elongatus [TaxId:32046] [188751] (2 PDB entries)
    11. 905067Species Thermosynechococcus vulcanus [TaxId:32053] [189921] (1 PDB entry)

More info for Family a.3.1.1: monodomain cytochrome c

Timeline for Family a.3.1.1: monodomain cytochrome c: