SCOP 1.57: Family a.3.1.1: monodomain cytochrome c

Lineage for Family a.3.1.1: monodomain cytochrome c

1. Root: SCOP 1.57

2. Class a: All alpha proteins [46456] (144 folds)

3. Fold a.3: Cytochrome c [46625] (1 superfamily)

4. Superfamily a.3.1: Cytochrome c [46626] (5 families)

5. Family a.3.1.1: monodomain cytochrome c [46627] (11 proteins)

Proteins:

1. Cytochrome c2 [46650] (7 species)

   1. Species Paracoccus denitrificans [TaxId:266] [46657] (2 PDB entries)

   2. Species Rhodobacter capsulatus [TaxId:1061] [46652] (2 PDB entries)

   3. Species Rhodobacter sphaeroides [TaxId:1063] [46653] (3 PDB entries)

   4. Species Rhodopila globiformis [TaxId:1071] [46656] (1 PDB entry)

   5. Species Rhodopseudomonas palustris [TaxId:1076] [46655] (3 PDB entries)

   6. Species Rhodopseudomonas viridis [TaxId:1079] [46654] (3 PDB entries)

   7. Species Rhodospirillum rubrum [TaxId:1085] [46651] (2 PDB entries)

2. Cytochrome c5 [46658] (1 species)

   • Species Azotobacter vinelandii [TaxId:354] [46659] (1 PDB entry)

3. Cytochrome c551 [46660] (4 species)

   1. Species Ectothiorhodospira halophila [TaxId:17] [46664] (1 PDB entry)

   2. Species Paracoccus denitrificans [TaxId:266] [46663] (1 PDB entry)

   3. Species Pseudomonas aeruginosa [TaxId:287] [46662] (4 PDB entries)

   4. Species Pseudomonas stutzeri [TaxId:316] [46661] (3 PDB entries)

4. Cytochrome c552 [46636] (5 species)

   1. Species Hydrogenobacter thermophilus [TaxId:940] [46640] (1 PDB entry)

   2. Species Nitrosomonas europaea [TaxId:915] [46641] (2 PDB entries)

   3. Species Paracoccus denitrificans [TaxId:266] [46639] (3 PDB entries)

   4. Species Pseudomonas nautica [TaxId:2743] [46638] (1 PDB entry)

   5. Species Thermus thermophilus [TaxId:274] [46637] (3 PDB entries)

5. Cytochrome c555 [46665] (1 species)

   • Species Chlorobium thiosulfatophilum [46666] (1 PDB entry)

6. Cytochrome c6 (synonym: cytochrome c553) [46628] (9 species)

   1. Species Arthrospira maxima [TaxId:129910] [63457] (1 PDB entry)

   2. Species Bacillus pasteurii [TaxId:1474] [46629] (2 PDB entries)

   3. Species Chlamydomonas reinhardtii [TaxId:3055] [46633] (2 PDB entries)

   4. Species Cyanobacterium (Synechococcus elongatus) [TaxId:32046] [46634] (1 PDB entry)

   5. Species Desulfovibrio desulfuricans [TaxId:876] [46632] (1 PDB entry)

   6. Species Desulfovibrio vulgaris, different strains [TaxId:881] [46631] (2 PDB entries)

   7. Species Green alga (Scenedesmus obliquus) [TaxId:3088] [46635] (2 PDB entries)

   8. Species Monoraphidium braunii [TaxId:34112] [46630] (3 PDB entries)

   9. Species Red alga (Porphyra yezoensis) [TaxId:2788] [63458] (1 PDB entry)

7. Cytochrome ch [46648] (1 species)

   • Species Methylobacterium extorquens [TaxId:408] [46649] (1 PDB entry)

8. Mitochondrial cytochrome c [46642] (5 species)

   1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [46643] (30 PDB entries)

   2. Species Bonito (Katsuwonus pelamis) [TaxId:8226] [46647] (1 PDB entry)

   3. Species Horse (Equus caballus) [TaxId:9796] [46644] (12 PDB entries)

   4. Species Rice embryos (Oryza sativa) [TaxId:4530] [46645] (1 PDB entry)

   5. Species Tuna (Thunnus alalunga and Thunnus thynnus) [46646] (4 PDB entries)

9. p-Cresol methylhydroxylase, cytochrome c subunit [46669] (1 species)

   • Species Pseudomonas putida [TaxId:303] [46670] (2 PDB entries)

10. Photosystem II associated cytochrome c549 [63459] (2 species)

    1. Species Arthrospira maxima [TaxId:129910] [63461] (1 PDB entry)

    2. Species Synechocystis sp., pcc 6803 [TaxId:1148] [63460] (1 PDB entry)

11. SHP, an oxygen binding cytochrome c [46667] (1 species)

    • Species Rhodobacter sphaeroides [TaxId:1063] [46668] (4 PDB entries)

More info for Family a.3.1.1: monodomain cytochrome c

Timeline for Family a.3.1.1: monodomain cytochrome c:

• Family a.3.1.1: monodomain cytochrome c first appeared (with stable ids) in SCOP 1.55
  
• Family a.3.1.1: monodomain cytochrome c appears in SCOP 1.59
  
• Family a.3.1.1: monodomain cytochrome c appears in the current release, SCOPe 2.08