Lineage for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2299347Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 2299348Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. 2302308Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (7 proteins)
    oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
    binds a bilin chromophore
    automatically mapped to Pfam PF00502

Proteins:

  1. 2302309Allophycocyanin alpha subunit [88953] (3 species)
    1. 2302310Species Mastigocladus laminosus [TaxId:83541] [88955] (1 PDB entry)
    2. 2302317Species Red algae (Porphyra yezoensis) [TaxId:2788] [88956] (1 PDB entry)
    3. 2302319Species Spirulina platensis [TaxId:118562] [88954] (1 PDB entry)
  2. 2302321Allophycocyanin beta subunit [88957] (3 species)
    1. 2302322Species Mastigocladus laminosus [TaxId:83541] [88959] (1 PDB entry)
    2. 2302329Species Red algae (Porphyra yezoensis) [TaxId:2788] [88960] (1 PDB entry)
    3. 2302331Species Spirulina platensis [TaxId:118562] [88958] (1 PDB entry)
  3. 2302333Phycocyanin alpha subunit [88933] (10 species)
    1. 2302334Species Fremyella diplosiphon [TaxId:1197] [88937] (1 PDB entry)
    2. 2302337Species Leptolyngbya sp. [TaxId:574115] [256952] (1 PDB entry)
    3. 2302344Species Red alga (Cyanidium caldarium) [TaxId:2771] [88934] (1 PDB entry)
    4. 2302346Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88936] (1 PDB entry)
    5. 2302350Species Spirulina platensis [TaxId:118562] [88939] (2 PDB entries)
    6. 2302375Species Spirulina sp. [TaxId:1157] [158219] (1 PDB entry)
    7. 2302388Species Synechococcus elongatus [TaxId:32046] [88967] (1 PDB entry)
    8. 2302390Species Synechococcus vulcanus [TaxId:32053] [88938] (8 PDB entries)
    9. 2302399Species Thermosynechococcus elongatus [TaxId:146786] [401378] (2 PDB entries)
    10. 2302404Species Thermosynechococcus elongatus [TaxId:197221] [189582] (11 PDB entries)
  4. 2302416Phycocyanin beta subunit [88940] (9 species)
    1. 2302417Species Fremyella diplosiphon [TaxId:1197] [88943] (1 PDB entry)
    2. 2302420Species Red alga (Cyanidium caldarium) [TaxId:2771] [88941] (1 PDB entry)
    3. 2302422Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88942] (1 PDB entry)
    4. 2302426Species Spirulina platensis [TaxId:118562] [88952] (2 PDB entries)
    5. 2302451Species Synechococcus elongatus [TaxId:32046] [88968] (1 PDB entry)
    6. 2302453Species Synechococcus vulcanus [TaxId:32053] [88944] (6 PDB entries)
    7. 2302460Species Thermosynechococcus elongatus [TaxId:146786] [401365] (2 PDB entries)
    8. 2302465Species Thermosynechococcus elongatus [TaxId:197221] [189583] (11 PDB entries)
    9. 2302477Species Thermosynechococcus vulcanus [TaxId:32053] [193917] (2 PDB entries)
  5. 2302480Phycoerythrin alpha subunit [88961] (3 species)
    1. 2302481Species Red alga (Griffithsia monilis) [TaxId:42003] [88511] (1 PDB entry)
    2. 2302484Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88510] (1 PDB entry)
    3. 2302487Species Red algae (Gracilaria chilensis) [TaxId:2775] [88512] (1 PDB entry)
  6. 2302490Phycoerythrin beta subunit [88513] (4 species)
    1. 2302491Species Cryptophyte (Rhodomonas sp. CS24) [TaxId:79257] [46544] (3 PDB entries)
      Uniprot P27198
    2. 2302498Species Red alga (Griffithsia monilis) [TaxId:42003] [88515] (1 PDB entry)
    3. 2302501Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88514] (1 PDB entry)
    4. 2302504Species Red algae (Gracilaria chilensis) [TaxId:2775] [88516] (1 PDB entry)
  7. 2302507automated matches [190531] (20 species)
    not a true protein
    1. 2302508Species Acaryochloris marina [TaxId:155978] [353706] (1 PDB entry)
    2. 2302511Species Chroomonas sp. [TaxId:3029] [257042] (1 PDB entry)
    3. 2302514Species Gloeobacter violaceus [TaxId:33072] [188397] (4 PDB entries)
    4. 2302535Species Hemiselmis andersenii [TaxId:464988] [257044] (1 PDB entry)
    5. 2302542Species Hemiselmis virescens [TaxId:77927] [257033] (1 PDB entry)
    6. 2302545Species Leptolyngbya sp. [TaxId:47254] [255594] (1 PDB entry)
    7. 2302570Species Leptolyngbya sp. [TaxId:574115] [256954] (1 PDB entry)
    8. 2302577Species Mastigocladus laminosus [TaxId:83541] [187515] (3 PDB entries)
    9. 2302584Species Nostoc sp. [TaxId:1180] [370150] (1 PDB entry)
    10. 2302587Species Palmaria palmata [TaxId:2822] [323523] (1 PDB entry)
    11. 2302600Species Phormidium rubidum [TaxId:865859] [272704] (5 PDB entries)
    12. 2302699Species Phormidium sp. [TaxId:1199] [255592] (1 PDB entry)
    13. 2302724Species Pseudanabaena sp. [TaxId:1357935] [330784] (1 PDB entry)
    14. 2302737Species Red alga (Porphyridium purpureum) [TaxId:35688] [194584] (5 PDB entries)
    15. 2302753Species Red algae (Galdieria sulphuraria) [TaxId:130081] [188789] (2 PDB entries)
    16. 2302758Species Red algae (Gracilaria chilensis) [TaxId:2775] [187492] (2 PDB entries)
    17. 2302773Species Spirulina sp. [TaxId:1157] [255593] (1 PDB entry)
    18. 2302786Species Synechococcus elongatus [TaxId:1140] [193231] (2 PDB entries)
    19. 2302817Species Synechocystis sp. [TaxId:1111708] [193921] (2 PDB entries)
    20. 2302823Species Thermosynechococcus vulcanus [TaxId:32053] [188656] (1 PDB entry)

More info for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

Timeline for Family a.1.1.3: Phycocyanin-like phycobilisome proteins: