SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1976410Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 1976411Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. 1978832Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (7 protein domains)
    oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
    binds a bilin chromophore
    automatically mapped to Pfam PF00502

Protein Domains:

  1. 1978833Allophycocyanin alpha subunit [88953] (3 species)
    1. 1978834Species Mastigocladus laminosus [TaxId:83541] [88955] (1 PDB entry)
    2. 1978841Species Red algae (Porphyra yezoensis) [TaxId:2788] [88956] (1 PDB entry)
    3. 1978843Species Spirulina platensis [TaxId:118562] [88954] (1 PDB entry)
  2. 1978845Allophycocyanin beta subunit [88957] (3 species)
    1. 1978846Species Mastigocladus laminosus [TaxId:83541] [88959] (1 PDB entry)
    2. 1978853Species Red algae (Porphyra yezoensis) [TaxId:2788] [88960] (1 PDB entry)
    3. 1978855Species Spirulina platensis [TaxId:118562] [88958] (1 PDB entry)
  3. 1978857Phycocyanin alpha subunit [88933] (9 species)
    1. 1978858Species Fremyella diplosiphon [TaxId:1197] [88937] (1 PDB entry)
    2. 1978861Species Leptolyngbya sp. [TaxId:574115] [256952] (1 PDB entry)
    3. 1978868Species Red alga (Cyanidium caldarium) [TaxId:2771] [88934] (1 PDB entry)
    4. 1978870Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88936] (1 PDB entry)
    5. 1978874Species Spirulina platensis [TaxId:118562] [88939] (2 PDB entries)
    6. 1978899Species Spirulina sp. [TaxId:1157] [158219] (1 PDB entry)
    7. 1978912Species Synechococcus elongatus [TaxId:32046] [88967] (1 PDB entry)
    8. 1978914Species Synechococcus vulcanus [TaxId:32053] [88938] (8 PDB entries)
    9. 1978923Species Thermosynechococcus elongatus [TaxId:197221] [189582] (4 PDB entries)
  4. 1978928Phycocyanin beta subunit [88940] (8 species)
    1. 1978929Species Fremyella diplosiphon [TaxId:1197] [88943] (1 PDB entry)
    2. 1978932Species Red alga (Cyanidium caldarium) [TaxId:2771] [88941] (1 PDB entry)
    3. 1978934Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88942] (1 PDB entry)
    4. 1978938Species Spirulina platensis [TaxId:118562] [88952] (2 PDB entries)
    5. 1978963Species Synechococcus elongatus [TaxId:32046] [88968] (1 PDB entry)
    6. 1978965Species Synechococcus vulcanus [TaxId:32053] [88944] (6 PDB entries)
    7. 1978972Species Thermosynechococcus elongatus [TaxId:197221] [189583] (4 PDB entries)
    8. 1978977Species Thermosynechococcus vulcanus [TaxId:32053] [193917] (2 PDB entries)
  5. 1978980Phycoerythrin alpha subunit [88961] (3 species)
    1. 1978981Species Red alga (Griffithsia monilis) [TaxId:42003] [88511] (1 PDB entry)
    2. 1978984Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88510] (1 PDB entry)
    3. 1978987Species Red algae (Gracilaria chilensis) [TaxId:2775] [88512] (1 PDB entry)
  6. 1978990Phycoerythrin beta subunit [88513] (4 species)
    1. 1978991Species Cryptophyte (Rhodomonas sp. CS24) [TaxId:79257] [46544] (3 PDB entries)
      Uniprot P27198
    2. 1978998Species Red alga (Griffithsia monilis) [TaxId:42003] [88515] (1 PDB entry)
    3. 1979001Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88514] (1 PDB entry)
    4. 1979004Species Red algae (Gracilaria chilensis) [TaxId:2775] [88516] (1 PDB entry)
  7. 1979007automated matches [190531] (18 species)
    not a true protein
    1. 1979008Species Chroomonas sp. [TaxId:3029] [257042] (1 PDB entry)
    2. 1979011Species Gloeobacter violaceus [TaxId:33072] [188397] (4 PDB entries)
    3. 1979032Species Hemiselmis andersenii [TaxId:464988] [257044] (1 PDB entry)
    4. 1979039Species Hemiselmis virescens [TaxId:77927] [257033] (1 PDB entry)
    5. 1979042Species Leptolyngbya sp. [TaxId:47254] [255594] (1 PDB entry)
    6. 1979067Species Leptolyngbya sp. [TaxId:574115] [256954] (1 PDB entry)
    7. 1979074Species Mastigocladus laminosus [TaxId:83541] [187515] (3 PDB entries)
    8. 1979081Species Phormidium rubidum [TaxId:865859] [272704] (3 PDB entries)
    9. 1979084Species Phormidium sp. [TaxId:1199] [255592] (1 PDB entry)
    10. 1979109Species Red alga (Porphyridium purpureum) [TaxId:35688] [194584] (2 PDB entries)
    11. 1979118Species Red algae (Galdieria sulphuraria) [TaxId:130081] [188789] (2 PDB entries)
    12. 1979123Species Red algae (Gracilaria chilensis) [TaxId:2775] [187492] (1 PDB entry)
    13. 1979136Species Spirulina sp. [TaxId:1157] [255593] (1 PDB entry)
    14. 1979149Species Synechococcus elongatus [TaxId:1140] [193231] (2 PDB entries)
    15. 1979180Species Synechocystis sp. [TaxId:1111708] [193921] (2 PDB entries)
    16. 1979186Species Thermosynechococcus vulcanus [TaxId:32053] [188656] (1 PDB entry)
    17. 2280222Species Palmaria palmata [TaxId:2822] [323523] (1 PDB entry)
    18. 2287483Species Pseudanabaena sp. [TaxId:1357935] [330784] (1 PDB entry)

More info for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

Timeline for Family a.1.1.3: Phycocyanin-like phycobilisome proteins: