Lineage for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2299347Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 2299348Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. 2301942Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (7 protein domains)
    oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
    binds a bilin chromophore
    automatically mapped to Pfam PF00502

Protein Domains:

  1. 2301943Allophycocyanin alpha subunit [88953] (3 species)
    1. 2301944Species Mastigocladus laminosus [TaxId:83541] [88955] (1 PDB entry)
    2. 2301951Species Red algae (Porphyra yezoensis) [TaxId:2788] [88956] (1 PDB entry)
    3. 2301953Species Spirulina platensis [TaxId:118562] [88954] (1 PDB entry)
  2. 2301955Allophycocyanin beta subunit [88957] (3 species)
    1. 2301956Species Mastigocladus laminosus [TaxId:83541] [88959] (1 PDB entry)
    2. 2301963Species Red algae (Porphyra yezoensis) [TaxId:2788] [88960] (1 PDB entry)
    3. 2301965Species Spirulina platensis [TaxId:118562] [88958] (1 PDB entry)
  3. 2301967Phycocyanin alpha subunit [88933] (9 species)
    1. 2301968Species Fremyella diplosiphon [TaxId:1197] [88937] (1 PDB entry)
    2. 2301971Species Leptolyngbya sp. [TaxId:574115] [256952] (1 PDB entry)
    3. 2301978Species Red alga (Cyanidium caldarium) [TaxId:2771] [88934] (1 PDB entry)
    4. 2301980Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88936] (1 PDB entry)
    5. 2301984Species Spirulina platensis [TaxId:118562] [88939] (2 PDB entries)
    6. 2302009Species Spirulina sp. [TaxId:1157] [158219] (1 PDB entry)
    7. 2302022Species Synechococcus elongatus [TaxId:32046] [88967] (1 PDB entry)
    8. 2302024Species Synechococcus vulcanus [TaxId:32053] [88938] (8 PDB entries)
    9. 2302033Species Thermosynechococcus elongatus [TaxId:197221] [189582] (9 PDB entries)
  4. 2302043Phycocyanin beta subunit [88940] (8 species)
    1. 2302044Species Fremyella diplosiphon [TaxId:1197] [88943] (1 PDB entry)
    2. 2302047Species Red alga (Cyanidium caldarium) [TaxId:2771] [88941] (1 PDB entry)
    3. 2302049Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88942] (1 PDB entry)
    4. 2302053Species Spirulina platensis [TaxId:118562] [88952] (2 PDB entries)
    5. 2302078Species Synechococcus elongatus [TaxId:32046] [88968] (1 PDB entry)
    6. 2302080Species Synechococcus vulcanus [TaxId:32053] [88944] (6 PDB entries)
    7. 2302087Species Thermosynechococcus elongatus [TaxId:197221] [189583] (9 PDB entries)
    8. 2302097Species Thermosynechococcus vulcanus [TaxId:32053] [193917] (2 PDB entries)
  5. 2302100Phycoerythrin alpha subunit [88961] (3 species)
    1. 2302101Species Red alga (Griffithsia monilis) [TaxId:42003] [88511] (1 PDB entry)
    2. 2302104Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88510] (1 PDB entry)
    3. 2302107Species Red algae (Gracilaria chilensis) [TaxId:2775] [88512] (1 PDB entry)
  6. 2302110Phycoerythrin beta subunit [88513] (4 species)
    1. 2302111Species Cryptophyte (Rhodomonas sp. CS24) [TaxId:79257] [46544] (3 PDB entries)
      Uniprot P27198
    2. 2302118Species Red alga (Griffithsia monilis) [TaxId:42003] [88515] (1 PDB entry)
    3. 2302121Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88514] (1 PDB entry)
    4. 2302124Species Red algae (Gracilaria chilensis) [TaxId:2775] [88516] (1 PDB entry)
  7. 2302127automated matches [190531] (19 species)
    not a true protein
    1. 2302128Species Chroomonas sp. [TaxId:3029] [257042] (1 PDB entry)
    2. 2302131Species Gloeobacter violaceus [TaxId:33072] [188397] (4 PDB entries)
    3. 2302152Species Hemiselmis andersenii [TaxId:464988] [257044] (1 PDB entry)
    4. 2302159Species Hemiselmis virescens [TaxId:77927] [257033] (1 PDB entry)
    5. 2302162Species Leptolyngbya sp. [TaxId:47254] [255594] (1 PDB entry)
    6. 2302187Species Leptolyngbya sp. [TaxId:574115] [256954] (1 PDB entry)
    7. 2302194Species Mastigocladus laminosus [TaxId:83541] [187515] (3 PDB entries)
    8. 2302201Species Palmaria palmata [TaxId:2822] [323523] (1 PDB entry)
    9. 2302214Species Phormidium rubidum [TaxId:865859] [272704] (5 PDB entries)
    10. 2302313Species Phormidium sp. [TaxId:1199] [255592] (1 PDB entry)
    11. 2302338Species Pseudanabaena sp. [TaxId:1357935] [330784] (1 PDB entry)
    12. 2302351Species Red alga (Porphyridium purpureum) [TaxId:35688] [194584] (2 PDB entries)
    13. 2302360Species Red algae (Galdieria sulphuraria) [TaxId:130081] [188789] (2 PDB entries)
    14. 2302365Species Red algae (Gracilaria chilensis) [TaxId:2775] [187492] (2 PDB entries)
    15. 2302380Species Spirulina sp. [TaxId:1157] [255593] (1 PDB entry)
    16. 2302393Species Synechococcus elongatus [TaxId:1140] [193231] (2 PDB entries)
    17. 2302424Species Synechocystis sp. [TaxId:1111708] [193921] (2 PDB entries)
    18. 2302430Species Thermosynechococcus vulcanus [TaxId:32053] [188656] (1 PDB entry)
    19. 3053644Species Acaryochloris marina [TaxId:155978] [353706] (1 PDB entry)

More info for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

Timeline for Family a.1.1.3: Phycocyanin-like phycobilisome proteins: