SCOPe 2.05: Domain d1ar1a_: 1ar1 A:

Lineage for d1ar1a_ (1ar1 A:)

1. Root: SCOPe 2.05

2. Class f: Membrane and cell surface proteins and peptides [56835] (57 folds)

3. Fold f.24: Cytochrome c oxidase subunit I-like [81443] (1 superfamily)
   12 transmembrane helices in an approximate threefold rotational symmetric arrangement

4. Superfamily f.24.1: Cytochrome c oxidase subunit I-like [81442] (1 family)

5. Family f.24.1.1: Cytochrome c oxidase subunit I-like [81441] (5 proteins)
   the largest and best conserved subunit, contains two heme groups, low spin heme a and high spin heme a3

6. Protein Bacterial aa3 type cytochrome c oxidase subunit I [81436] (2 species)

7. Species Paracoccus denitrificans [TaxId:266] [81434] (2 PDB entries)

8. Domain d1ar1a_: 1ar1 A: [43618]
   Other proteins in same PDB: d1ar1b1, d1ar1b2, d1ar1c_, d1ar1d_
   complexed with ca, cu, hea, lda, mg

Details for d1ar1a_

PDB Entry: 1ar1, 2.7 Å

PDB Description: Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans two-subunit Cytochrome C Oxidase Complexed with an Antibody Fv Fragment

PDB Compounds: (A:) cytochrome c oxidase

SCOPe Domain Sequences for d1ar1a_:

Sequence; same for both SEQRES and ATOM records:

>d1ar1a_ f.24.1.1 (A:) Bacterial aa3 type cytochrome c oxidase subunit I {Paracoccus denitrificans [TaxId: 266]}
gfftrwfmstnhkdigilylftagivglisvcftvymrmelqhpgvqymclegarliada
saectpnghlwnvmityhgvlmmffvvipalfggfgnyfmplhigapdmafprlnnlsyw
myvcgvalgvasllapggndqmgsgvgwvlypplstteagysmdlaifavhvsgassilg
ainiittflnmrapgmtlfkvplfawsvfitawlillslpvlagaitmllmdrnfgtqff
dpagggdpvlyqhilwffghpevyiiilpgfgiishvistfakkpifgylpmvlamaaig
ilgfvvwahhmytagmsltqqayfmlatmtiavptgikvfswiatmwggsiefktpmlwa
fgflflftvggvtgvvlsqapldrvyhdtyyvvahfhyvmslgavfgifagvyywigkms
grqypewagqlhfwmmfigsnliffpqhflgrqgmprryidypvefaywnnissigayis
fasflffigivfytlfagkrvnvpnywnehadtlewtlpspppehtfet

Timeline for d1ar1a_:

• d1ar1a_ first appeared (with stable ids) in SCOP 1.55, called d1ar1a1
  
• d1ar1a_ appears in SCOPe 2.04
  
• d1ar1a_ appears in SCOPe 2.06
  
• d1ar1a_ appears in the current release, SCOPe 2.08