Lineage for Species: Vibrio parahaemolyticus [TaxId: 670]

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2970038Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2970927Superfamily d.110.6: Sensory domain-like [103190] (5 families) (S)
    alpha(2)-beta(2)-alpha(2)-beta(3); possibly related to the PAS domain
  5. 2970952Family d.110.6.2: YkuI C-terminal domain-like [143732] (3 proteins)
    PfamB PB021678
  6. 2970953Protein GGDEF family protein VP0354, C-terminal domain [419049] (1 species)
    protein is N-terminal region; consists of two sensory domain-like domains; there is a canonical sensory (PAS) domain in the middle region
  7. 2970954Species Vibrio parahaemolyticus [TaxId:670] [419536] (3 PDB entries)
    Uniprot Q87SR8 207-299

PDB entries in Species: Vibrio parahaemolyticus [TaxId: 670]:

  1. Domain(s) for 2p7j:
    1. 2970955Domain d2p7ja1: 2p7j A:181-273 [149287]
      Other proteins in same PDB: d2p7ja2, d2p7jb2
      complexed with acy, na, so4
      missing some secondary structures that made up less than one-third of the common domain
    2. 2970956Domain d2p7jb1: 2p7j B:181-281 [149289]
      Other proteins in same PDB: d2p7ja2, d2p7jb2
      automated match to d2p7ja1
      complexed with acy, na, so4

      missing some secondary structures that made up less than one-third of the common domain
  2. Domain(s) for 3lid:
    1. 2970957Domain d3lida2: 3lid A:207-311 [232845]
      Other proteins in same PDB: d3lida1, d3lidb1
      automated match to d2p7jb1
      complexed with cl, edo, po4

      missing some secondary structures that made up less than one-third of the common domain
    2. 2970958Domain d3lidb2: 3lid B:207-311 [239431]
      Other proteins in same PDB: d3lida1, d3lidb1
      automated match to d3lida2
      complexed with cl, edo, po4

      missing some secondary structures that made up less than one-third of the common domain
  3. Domain(s) for 3lie:
    1. 2970959Domain d3liea2: 3lie A:207-302 [232844]
      Other proteins in same PDB: d3liea1, d3lieb1
      automated match to d2p7jb1
      complexed with mg

      missing some secondary structures that made up less than one-third of the common domain
    2. 2970960Domain d3lieb2: 3lie B:207-300 [239433]
      Other proteins in same PDB: d3liea1, d3lieb1
      automated match to d3liea2
      complexed with mg

      missing some secondary structures that made up less than one-third of the common domain

More info for Species Vibrio parahaemolyticus [TaxId:670] from d.110.6.2 GGDEF family protein VP0354, C-terminal domain

Timeline for Species Vibrio parahaemolyticus [TaxId:670] from d.110.6.2 GGDEF family protein VP0354, C-terminal domain:

  • Species Vibrio parahaemolyticus [TaxId:670] from d.110.6.2 GGDEF family protein VP0354, C-terminal domain is new in SCOPe 2.08-stable