Lineage for Species: Vibrio parahaemolyticus [TaxId: 670]

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2970038Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2970927Superfamily d.110.6: Sensory domain-like [103190] (5 families) (S)
    alpha(2)-beta(2)-alpha(2)-beta(3); possibly related to the PAS domain
  5. 2970952Family d.110.6.2: YkuI C-terminal domain-like [143732] (3 proteins)
    PfamB PB021678
  6. 2970961Protein GGDEF family protein VP0354, N-terminal domain [419048] (1 species)
    protein is N-terminal region; consists of two sensory domain-like domains; there is a canonical sensory (PAS) domain in the middle region
  7. 2970962Species Vibrio parahaemolyticus [TaxId:670] [419535] (3 PDB entries)
    Uniprot Q87SR8 35-206

PDB entries in Species: Vibrio parahaemolyticus [TaxId: 670]:

  1. Domain(s) for 2p7j:
    1. 2970963Domain d2p7ja2: 2p7j A:9-180 [149288]
      Other proteins in same PDB: d2p7ja1, d2p7jb1
      complexed with acy, na, so4
    2. 2970964Domain d2p7jb2: 2p7j B:8-180 [149290]
      Other proteins in same PDB: d2p7ja1, d2p7jb1
      automated match to d2p7ja2
      complexed with acy, na, so4
  2. Domain(s) for 3lid:
    1. 2970965Domain d3lida1: 3lid A:33-206 [232842]
      Other proteins in same PDB: d3lida2, d3lidb2
      automated match to d2p7jb2
      complexed with cl, edo, po4
    2. 2970966Domain d3lidb1: 3lid B:36-206 [239430]
      Other proteins in same PDB: d3lida2, d3lidb2
      automated match to d3lida1
      complexed with cl, edo, po4
  3. Domain(s) for 3lie:
    1. 2970967Domain d3liea1: 3lie A:30-206 [232843]
      Other proteins in same PDB: d3liea2, d3lieb2
      automated match to d2p7jb2
      complexed with mg
    2. 2970968Domain d3lieb1: 3lie B:33-206 [239432]
      Other proteins in same PDB: d3liea2, d3lieb2
      automated match to d3liea1
      complexed with mg

More info for Species Vibrio parahaemolyticus [TaxId:670] from d.110.6.2 GGDEF family protein VP0354, N-terminal domain

Timeline for Species Vibrio parahaemolyticus [TaxId:670] from d.110.6.2 GGDEF family protein VP0354, N-terminal domain:

  • Species Vibrio parahaemolyticus [TaxId:670] from d.110.6.2 GGDEF family protein VP0354, N-terminal domain is new in SCOPe 2.08-stable