SCOPe 2.08: Domain d1b04a_: 1b04 A:

Lineage for d1b04a_ (1b04 A:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.142: ATP-grasp [56058] (2 superfamilies)
   Consists of two subdomains with different alpha+beta folds
   shares functional and structural similarities with the PIPK and protein kinase superfamilies

4. Superfamily d.142.2: DNA ligase/mRNA capping enzyme, catalytic domain [56091] (6 families)
   has a circularly permuted topology

5. Family d.142.2.2: Adenylation domain of NAD+-dependent DNA ligase [56096] (2 proteins)
   automatically mapped to Pfam PF01653

6. Protein Adenylation domain of NAD+-dependent DNA ligase [56097] (4 species)
   contains additional, N-terminal all-alpha subdomain

7. Species Bacillus stearothermophilus [TaxId:1422] [56098] (1 PDB entry)

8. Domain d1b04a_: 1b04 A: [41579]

Details for d1b04a_

PDB Entry: 1b04, 2.8 Å

PDB Description: structure of the adenylation domain of an nad+ dependent ligase

PDB Compounds: (A:) protein (DNA ligase)

SCOPe Domain Sequences for d1b04a_:

Sequence, based on SEQRES records:

>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]}
drqqaerraaelrellnrygyeyyvldrpsvpdaeydrlmqeliaieeqypelktsdspt
qriggppleafrkvahrvpmmslanafgegdlrdfdrrvrqevgeaayvcelaidglavs
vryedgyfvqgatrgdgttgeditenlktirslplrlkepvsleargeafmpkasflrln
eerkargeelfanprnaaagslrqldpkvaasrqldlfvygladaealgiashsealdyl
qalgfkvnperrrcanideviafvsewhdkrpqlpyeidgivikvdsfaqqralgataks
prwaiaykfpae

Sequence, based on observed residues (ATOM records):

>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]}
drqqaerraaelrellnrygyeyyvldrpsvpdaeydrlmqeliaieeqypelktsdspt
qriggppleafrkvahrvpmmslanafgegdlrdfdrrvrqevgeaayvcelaidglavs
vryedgyfvqgatrgdgttgeditenlktirslplrlkepvsleargeafmpkasflrln
eerkarelfanprnaaagslrqldpkvaasrqldlfvygladaealgiashsealdylqa
lgfkvnperrrcanideviafvsewhdkrpqlpyeidgivikvdsfaqqralgatakspr
waiaykfpae

Timeline for d1b04a_:

• d1b04a_ first appeared (with stable ids) in SCOP 1.55
  
• d1b04a_ appears in SCOPe 2.07