Lineage for d1fvia2 (1fvi A:2-189)

  1. Root: SCOP 1.69
  2. 496776Class d: Alpha and beta proteins (a+b) [53931] (279 folds)
  3. 511685Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 511897Superfamily d.142.2: DNA ligase/mRNA capping enzyme, catalytic domain [56091] (4 families) (S)
    has a circularly permuted topology
  5. 511898Family d.142.2.1: ATP-dependent DNA ligase, N-terminal domain [56092] (1 protein)
  6. 511899Protein ATP-dependent DNA ligase, N-terminal domain [56093] (2 species)
  7. 511902Species Chlorella virus, PBCV-1 [56095] (2 PDB entries)
  8. 511903Domain d1fvia2: 1fvi A:2-189 [41578]
    Other proteins in same PDB: d1fvia1

Details for d1fvia2

PDB Entry: 1fvi (more details), 2 Å

PDB Description: crystal structure of chlorella virus dna ligase-adenylate

SCOP Domain Sequences for d1fvia2:

Sequence, based on SEQRES records: (download)

>d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus, PBCV-1}
aitkpllaatleniedvqfpclatpkiagirsvkqtqmlsrtfkpirnsvmnrlltellp
egsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyit
vhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlke
gillkmkq

Sequence, based on observed residues (ATOM records): (download)

>d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus, PBCV-1}
aitkpllaatleniedvqfpclatpkiagirsvkqtqmlsrtfkpirnsvmnrlltellp
egsdgeisiegatfqdttsavmtghakfsyywfdyvtddplkkyidrvedmknyitvhph
ilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlkegill
kmkq

SCOP Domain Coordinates for d1fvia2:

Click to download the PDB-style file with coordinates for d1fvia2.
(The format of our PDB-style files is described here.)

Timeline for d1fvia2:

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Domains from same chain:
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d1fvia1