SCOP 1.75: Domain d1ndoc2: 1ndo C:155-447

Lineage for d1ndoc2 (1ndo C:155-447)

1. Root: SCOP 1.75

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.129: TBP-like [55944] (11 superfamilies)
   beta-alpha-beta(4)-alpha

4. Superfamily d.129.3: Bet v1-like [55961] (10 families)
   contains a single copy of this fold with a alpha-beta2 insertion after the first helix; there is a cavity between the beta-sheet and the long C-terminal helix

5. Family d.129.3.3: Ring hydroxylating alpha subunit catalytic domain [55969] (6 proteins)
   Pfam PF00848; contains a few insertion and C-terminal extension compared with Bet v1

6. Protein Naphthalene 1,2-dioxygenase alpha subunit, C-domain [55970] (2 species)

7. Species Pseudomonas putida [TaxId:303] [55971] (16 PDB entries)

8. Domain d1ndoc2: 1ndo C:155-447 [41324]
   Other proteins in same PDB: d1ndoa1, d1ndob_, d1ndoc1, d1ndod_, d1ndoe1, d1ndof_

Details for d1ndoc2

PDB Entry: 1ndo, 2.25 Å

PDB Description: napthalene 1,2-dioxygenase

PDB Compounds: (C:) napthalene 1,2-dioxygenase

SCOP Domain Sequences for d1ndoc2:

Sequence; same for both SEQRES and ATOM records:

>d1ndoc2 d.129.3.3 (C:155-447) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Pseudomonas putida [TaxId: 303]}
eapplmdylgdaawylepmfkhsgglelvgppgkvvikanwkapaenfvgdayhvgwtha
sslrsgesifsslagnaalppegaglqmtskygsgmgvlwdgysgvhsadlvpelmafgg
akqerlnkeigdvrariyrshlnctvfpnnsmltcsgvfkvwnpidanttevwtyaivek
dmpedlkrrladsvqrtfgpagfwesddndnmetasqngkkyqsrdsdllsnlgfgedvy
gdavypgvvgksaigetsyrgfyrayqahvsssnwaefehasstwhteltktt

Timeline for d1ndoc2:

• d1ndoc2 first appeared (with stable ids) in SCOP 1.55
  
• d1ndoc2 appears in SCOP 1.73
  
• d1ndoc2 appears in SCOPe 2.01
  
• d1ndoc2 appears in the current release, SCOPe 2.08