Lineage for d6xcya_ (6xcy A:)

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2408655Fold b.50: Acid proteases [50629] (1 superfamily)
    barrel, closed; n=6, S=10, complex topology
  4. 2408656Superfamily b.50.1: Acid proteases [50630] (4 families) (S)
  5. 2410318Family b.50.1.2: Pepsin-like [50646] (11 proteins)
    duplication: consists of two similar barrel domains
    N-terminal: barrel, partly opened; n*=6, S*=10
  6. 2411615Protein Pepsin(ogen) [50658] (4 species)
  7. 2411628Species Pig (Sus scrofa) [TaxId:9823] [50659] (12 PDB entries)
  8. 2411634Domain d6xcya_: 6xcy A: [407299]
    automated match to d1f34a_
    complexed with rit

Details for d6xcya_

PDB Entry: 6xcy (more details), 2.05 Å

PDB Description: porcine pepsin in complex with ritonavir
PDB Compounds: (A:) pepsin a

SCOPe Domain Sequences for d6xcya_:

Sequence, based on SEQRES records: (download)

>d6xcya_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}
igdeplenyldteyfgtigigtpaqdftvifdtgssnlwvpsvycsslacsdhnqfnpdd
sstfeatsqelsitygtgsmtgilgydtvqvggisdtnqifglsetepgsflyyapfdgi
lglaypsisasgatpvfdnlwdqglvsqdlfsvylssnddsgsvvllggidssyytgsln
wvpvsvegywqitldsitmdgetiacsggcqaivdtgtslltgptsaianiqsdigasen
sdgemviscssidslpdivftingvqyplspsayilqdddsctsgfegmdvptssgelwi
lgdvfirqyytvfdrannkvglapva

Sequence, based on observed residues (ATOM records): (download)

>d6xcya_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}
igdeplenyldteyfgtigigtpaqdftvifdtgssnlwvpsvycsslacsdhnqfnpdd
sstfeatsqelsitygtgsmtgilgydtvqvggisdtnqifglsetepgsflyyapfdgi
lglaypsisasgatpvfdnlwdqglvsqdlfsvylssnddsgsvvllggidssyytgsln
wvpvsvegywqitldsitmdgetiacsggcqaivdtgtslltgptsaianiqsdigasen
sdgemviscssidslpdivftingvqyplspsayilqddsctsgfegmdvptssgelwil
gdvfirqyytvfdrannkvglapva

SCOPe Domain Coordinates for d6xcya_:

Click to download the PDB-style file with coordinates for d6xcya_.
(The format of our PDB-style files is described here.)

Timeline for d6xcya_: