SCOPe 2.08: Domain d7lm8a_: 7lm8 A:

Lineage for d7lm8a_ (7lm8 A:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
   core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542

4. Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family)
   automatically mapped to Pfam PF09408

5. Family d.318.1.1: SARS receptor-binding domain-like [143588] (2 proteins)
   part of PfamB PB000266

6. Protein Spike protein S1 [143589] (5 species)

7. Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382292] (118 PDB entries)

8. Domain d7lm8a_: 7lm8 A: [402273]
   Other proteins in same PDB: d7lm8h_, d7lm8l1, d7lm8l2, d7lm8m_, d7lm8n1, d7lm8n2
   automated match to d2dd8s1
   complexed with edo, fuc, nag

Details for d7lm8a_

PDB Entry: 7lm8, 1.94 Å

PDB Description: crystal structure of sars-cov-2 spike protein receptor-binding domain in complex with two cross-neutralizing antibodies cv38-142 and cova1- 16 fabs isolated from covid-19 patients

PDB Compounds: (A:) Spike protein S1

SCOPe Domain Sequences for d7lm8a_:

Sequence; same for both SEQRES and ATOM records:

>d7lm8a_ d.318.1.1 (A:) Spike protein S1 {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgpkk

Timeline for d7lm8a_:

• d7lm8a_ first appeared in SCOPe 2.07