SCOPe 2.08: Domain d6vbgb_: 6vbg B:

Lineage for d6vbgb_ (6vbg B:)

1. Root: SCOPe 2.08

2. Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)

3. Fold f.38: MFS general substrate transporter [103472] (1 superfamily)
   12 transmembrane helices; duplication: the N- and C-terminal halves are structurally similar

4. Superfamily f.38.1: MFS general substrate transporter [103473] (5 families)

5. Family f.38.1.2: LacY-like proton/sugar symporter [103477] (2 proteins)
   automatically mapped to Pfam PF07690
   automatically mapped to Pfam PF01306

6. Protein automated matches [190249] (2 species)
   not a true protein

7. Species Escherichia coli [TaxId:562] [187028] (2 PDB entries)

8. Domain d6vbgb_: 6vbg B: [395979]
   Other proteins in same PDB: d6vbgc_, d6vbgd_
   automated match to d1pv7a_
   complexed with bng, gal, yio

Details for d6vbgb_

PDB Entry: 6vbg, 2.8 Å

PDB Description: lactose permease complex with thiodigalactoside and nanobody 9043

PDB Compounds: (B:) Galactoside permease

SCOPe Domain Sequences for d6vbgb_:

Sequence, based on SEQRES records:

>d6vbgb_ f.38.1.2 (B:) automated matches {Escherichia coli [TaxId: 562]}
myylkntnfwmfglffffyffimgayfpffpiwlhdinhisksdtwiifaaislfsllfq
plfgllsdklglrkyllwiitgmlvmfapffififgpllqynilvgsivggiylgfcfna
gapaveafiekvsrrsnfefgrarmfgcvgwalcasivgimftinnqfvfwlgsgcalil
avllffaktdapssatvanavganhsafslklalelfrqpklwflslyvigvsctydvfd
qqfanfftsffatgeqgtrvfwyvttmgellnasimffapliinriggknalllagtims
vriigssfatsalevvilktlhmfevpfllvgcfkyitsqfevrfsatiylvcfcffkql
amifmsvlagnmyesigfqgaylvlglvalgftlisvftlsgpgplsll

Sequence, based on observed residues (ATOM records):

>d6vbgb_ f.38.1.2 (B:) automated matches {Escherichia coli [TaxId: 562]}
myylkntnfwmfglffffyffimgayfpffpiwlhdinhisksdtwiifaaislfsllfq
plfgllsdklglrkyllwiitgmlvmfapffififgpllqynilvgsivggiylgfcfna
gapaveafiekvsrrsnfefgrarmfgcvgwalcasivgimftinnqfvfwlgsgcalil
avllffaktdanhsafslklalelfrqpklwflslyvigvsctydvfdqqfanfftsffa
tgeqgtrvfwyvttmgellnasimffapliinriggknalllagtimsvriigssfatsa
levvilktlhmfevpfllvgcfkyitsqfevrfsatiylvcfcffkqlamifmsvlagnm
yesigfqgaylvlglvalgftlisvftlsgpgplsll

Timeline for d6vbgb_:

• d6vbgb_ first appeared in SCOPe 2.07