SCOPe 2.07: Domain d6xmjs1: 6xmj S:4-226

Lineage for d6xmjs1 (6xmj S:4-226)

1. Root: SCOPe 2.07

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.24: Four-helical up-and-down bundle [47161] (28 superfamilies)
   core: 4 helices; bundle, closed or partly opened, left-handed twist; up-and-down

4. Superfamily a.24.8: Proteasome activator [47216] (1 family)

5. Family a.24.8.1: Proteasome activator [47217] (3 proteins)

6. Protein automated matches [190828] (1 species)
   not a true protein

7. Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [188131] (7 PDB entries)

8. Domain d6xmjs1: 6xmj S:4-226 [393381]
   Other proteins in same PDB: d6xmja_, d6xmjb_, d6xmjc_, d6xmje_, d6xmjf_, d6xmjg_, d6xmjh_, d6xmji_, d6xmjj_, d6xmjk_, d6xmjl_, d6xmjm_, d6xmjn_, d6xmjo2, d6xmjp2, d6xmjq2, d6xmjr2, d6xmjs2, d6xmjt2, d6xmju2
   automated match to d3jrmo_

Details for d6xmjs1

PDB Entry: 6xmj, 3 Å

PDB Description: human 20s proteasome bound to an engineered 11s (pa26) activator

PDB Compounds: (S:) proteasome activator protein PA26

SCOPe Domain Sequences for d6xmjs1:

Sequence, based on SEQRES records:

>d6xmjs1 a.24.8.1 (S:4-226) automated matches {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
kraaliqnlrdsytetssfavieewaagtlqeiegiakaaaeahgvirnstygraqaeks
peqllgvlqryqdlchnvycqaetirtviairipehkeadnlgvavqhavlkiideleik
tlgsgeksgsggaptpigmyalreylsarstvedkllgsvdaesgktkggsqspslllel
rqidadfmlkvelatthlstmvravinayllnwkkliqprtgn

Sequence, based on observed residues (ATOM records):

>d6xmjs1 a.24.8.1 (S:4-226) automated matches {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
kraaliqnlrdsytetssfavieewaagtlqeiegiakaaaeahgvirnstygraqaeks
peqllgvlqryqdlchnvycqaetirtviairipehkeadnlgvavqhavlkiideleik
tlgspigmyalreylsarstvedkllgggsqspslllelrqidadfmlkvelatthlstm
vravinayllnwkkliqprtgn

Timeline for d6xmjs1:

• d6xmjs1 is new in SCOPe 2.07-stable