SCOPe 2.08: Domain d6urim_: 6uri M:

Lineage for d6urim_ (6uri M:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.110: Profilin-like [55769] (10 superfamilies)
   core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha

4. Superfamily d.110.4: SNARE-like [64356] (5 families)
   beta(2)-alpha-beta(3)-alpha(2)

5. Family d.110.4.2: Clathrin coat assembly domain [75521] (3 proteins)
   automatically mapped to Pfam PF01217

6. Protein automated matches [373811] (2 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [392494] (1 PDB entry)

8. Domain d6urim_: 6uri M: [392495]
   Other proteins in same PDB: d6uria_, d6urib_, d6uris_
   automated match to d2vglm1

Details for d6urim_

PDB Entry: 6uri, 3 Å

PDB Description: hiv-1 nef in complex with the cd4 cytoplasmic domain and the ap2 clathrin adaptor complex

PDB Compounds: (M:) ap-2 complex subunit mu

SCOPe Domain Sequences for d6urim_:

Sequence, based on SEQRES records:

>d6urim_ d.110.4.2 (M:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
migglfiynhkgevlisrvyrddigrnavdafrvnviharqqvrspvtniartsffhvkr
sniwlaavtkqnvnaamvfeflykmcdvmaayfgkiseeniknnfvliyelldeildfgy
pqns

Sequence, based on observed residues (ATOM records):

>d6urim_ d.110.4.2 (M:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
migglfiynhkgevlisrvyrddigrnavdafrvnvihvrspvtniartsffhvkrsniw
laavtkqnvnaamvfeflykmcdvmaayfgkiseeniknnfvliyelldeildfgypqns

Timeline for d6urim_:

• d6urim_ first appeared in SCOPe 2.07