SCOPe 2.08: Domain d6kbeb_: 6kbe B:

Lineage for d6kbeb_ (6kbe B:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.3: Cysteine proteinases [54000] (1 superfamily)
   consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn

4. Superfamily d.3.1: Cysteine proteinases [54001] (24 families)
   the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet

5. Family d.3.1.0: automated matches [191342] (1 protein)
   not a true family

6. Protein automated matches [190230] (23 species)
   not a true protein

7. Species Oryza sativa [TaxId:39947] [388123] (3 PDB entries)

8. Domain d6kbeb_: 6kbe B: [388125]
   Other proteins in same PDB: d6kbeg1, d6kbeg2
   automated match to d4dhib_

Details for d6kbeb_

PDB Entry: 6kbe, 2.34 Å

PDB Description: structure of deubiquitinase

PDB Compounds: (B:) ubiquitin thioesterase

SCOPe Domain Sequences for d6kbeb_:

Sequence, based on SEQRES records:

>d6kbeb_ d.3.1.0 (B:) automated matches {Oryza sativa [TaxId: 39947]}
lpyvgdkeplstlaaefqsgspilqekikllgeqydalrrtrgdgncfyrsfmfsylehi
letqdkaeverilkkieqckktladlgyieftfedffsifidqlesvlqghessigaeel
lertrdqmvsdyvvmffrfvtsgeiqrraeffepfisgltnstvvqfckasvepmgeesd
hvhiialsdalgvpirvmyldrsscdagnisvnhhdfspeanssdgaaaaekpyitllyr
pghydilypk

Sequence, based on observed residues (ATOM records):

>d6kbeb_ d.3.1.0 (B:) automated matches {Oryza sativa [TaxId: 39947]}
lpyvgdkeplstlaaefqsgspilqekikllgeqydalrrtrgdgncfyrsfmfsylehi
letqdkaeverilkkieqckktladlgyieftfedffsifidqlesvlqghessigaeel
lertrdqmvsdyvvmffrfvtsgeiqrraeffepfisgltnstvvqfckasvepmgeesd
hvhiialsdalgvpirvmyldrsscdagnisvnhhdfspekpyitllyrpghydilypk

Timeline for d6kbeb_:

• d6kbeb_ first appeared in SCOPe 2.07