Lineage for d1agba2 (1agb A:1-181)

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1641761Fold d.19: MHC antigen-recognition domain [54451] (1 superfamily)
    dimeric
  4. 1641762Superfamily d.19.1: MHC antigen-recognition domain [54452] (2 families) (S)
  5. 1641763Family d.19.1.1: MHC antigen-recognition domain [54453] (13 proteins)
  6. 1641840Protein Class I MHC, alpha-1 and alpha-2 domains [54468] (28 species)
  7. 1642022Species Human (Homo sapiens), HLA-B08 [TaxId:9606] [54473] (7 PDB entries)
  8. 1642029Domain d1agba2: 1agb A:1-181 [38263]
    Other proteins in same PDB: d1agba1, d1agbb_
    mutant

Details for d1agba2

PDB Entry: 1agb (more details), 2.2 Å

PDB Description: antagonist hiv-1 gag peptides induce structural changes in hla b8-hiv-1 gag peptide (ggrkkykl-3r mutation)
PDB Compounds: (A:) b*0801

SCOPe Domain Sequences for d1agba2:

Sequence; same for both SEQRES and ATOM records: (download)

>d1agba2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Human (Homo sapiens), HLA-B08 [TaxId: 9606]}
gshsmryfdtamsrpgrgeprfisvgyvddtqfvrfdsdaaspreeprapwieqegpeyw
drntqifktntqtdreslrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydg
kdyialnedlrswtaadtaaqitqrkweaarvaeqdraylegtcvewlrrylengkdtle
r

SCOPe Domain Coordinates for d1agba2:

Click to download the PDB-style file with coordinates for d1agba2.
(The format of our PDB-style files is described here.)

Timeline for d1agba2:

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Domains from same chain:
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d1agba1
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Domains from other chains:
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d1agbb_