Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2468838Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
    core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
  4. 2468839Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (60 families) (S)
  5. 2470120Family c.66.1.48: Nsp15 N-terminal domain-like [142625] (2 proteins)
    rudiment methyltransferase fold that probably has lost the enzymatic activity; contains extra N-terminal alpha+beta subdomain
  6. 3081917Protein automated matches [381979] (2 species)
    not a true protein

Species:

  1. 3081918Sars coronavirus [TaxId:227859] [381980] (1 PDB entry)
  2. 3082155Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382217] (18 PDB entries)
    1. Domains for 5s6x:
      1. 3095525Domain d5s6xa1: 5s6x A:1-190 [395587]
        Other proteins in same PDB: d5s6xa2, d5s6xa3, d5s6xb2, d5s6xb3
        automated match to d2rhba1
        complexed with cit, wug
      2. 3095577Domain d5s6xb1: 5s6x B:1-190 [395639]
        Other proteins in same PDB: d5s6xa2, d5s6xa3, d5s6xb2, d5s6xb3
        automated match to d2rhba1
        complexed with cit, wug
    2. Domains for 5s6y:
      1. 3095478Domain d5s6ya1: 5s6y A:1-190 [395540]
        Other proteins in same PDB: d5s6ya2, d5s6ya3, d5s6yb2, d5s6yb3
        automated match to d2rhba1
        complexed with cit, wuj
      2. 3095546Domain d5s6yb1: 5s6y B:1-190 [395608]
        Other proteins in same PDB: d5s6ya2, d5s6ya3, d5s6yb2, d5s6yb3
        automated match to d2rhba1
        complexed with cit, wuj
    3. Domains for 5s6z:
      1. 3095549Domain d5s6zb1: 5s6z B:1-190 [395611]
        Other proteins in same PDB: d5s6za2, d5s6za3, d5s6zb2, d5s6zb3
        automated match to d2rhba1
        complexed with cit, wum
      2. 3095758Domain d5s6za1: 5s6z A:1-190 [395820]
        Other proteins in same PDB: d5s6za2, d5s6za3, d5s6zb2, d5s6zb3
        automated match to d2rhba1
        complexed with cit, wum
    4. Domains for 5s70:
      1. 3095572Domain d5s70b1: 5s70 B:1-190 [395634]
        Other proteins in same PDB: d5s70a2, d5s70a3, d5s70b2, d5s70b3
        automated match to d2rhba1
        complexed with cit, wus
      2. 3095672Domain d5s70a1: 5s70 A:1-190 [395734]
        Other proteins in same PDB: d5s70a2, d5s70a3, d5s70b2, d5s70b3
        automated match to d2rhba1
        complexed with cit, wus
    5. Domains for 5s71:
      1. 3095555Domain d5s71b1: 5s71 B:1-190 [395617]
        Other proteins in same PDB: d5s71a2, d5s71a3, d5s71b2, d5s71b3
        automated match to d2rhba1
        complexed with cit, wuv
      2. 3095568Domain d5s71a1: 5s71 A:1-190 [395630]
        Other proteins in same PDB: d5s71a2, d5s71a3, d5s71b2, d5s71b3
        automated match to d2rhba1
        complexed with cit, wuv
    6. Domains for 5s72:
      1. 3095583Domain d5s72a1: 5s72 A:1-190 [395645]
        Other proteins in same PDB: d5s72a2, d5s72a3, d5s72b2, d5s72b3
        automated match to d2rhba1
        complexed with cit, wuy
      2. 3095635Domain d5s72b1: 5s72 B:1-190 [395697]
        Other proteins in same PDB: d5s72a2, d5s72a3, d5s72b2, d5s72b3
        automated match to d2rhba1
        complexed with cit, wuy
    7. Domains for 6w01:
      1. 3082156Domain d6w01b1: 6w01 B:2-191 [382218]
        Other proteins in same PDB: d6w01a2, d6w01a3, d6w01b2, d6w01b3
        automated match to d2rhba1
        complexed with cit, edo, peg
      2. 3082182Domain d6w01a1: 6w01 A:2-191 [382244]
        Other proteins in same PDB: d6w01a2, d6w01a3, d6w01b2, d6w01b3
        automated match to d2rhba1
        complexed with cit, edo, peg
    8. Domains for 6wlc:
      1. 3084856Domain d6wlca1: 6wlc A:0-191 [384918]
        Other proteins in same PDB: d6wlca2, d6wlcb2
        automated match to d2rhba1
        complexed with act, edo, fmt, so4, trs, u5p
      2. 3084865Domain d6wlcb1: 6wlc B:0-191 [384927]
        Other proteins in same PDB: d6wlca2, d6wlcb2
        automated match to d2rhba1
        complexed with act, edo, fmt, so4, trs, u5p
    9. Domains for 6wxc:
      1. 3085975Domain d6wxcb1: 6wxc B:2-191 [386037]
        Other proteins in same PDB: d6wxca2, d6wxca3, d6wxcb2, d6wxcb3
        automated match to d2rhba1
        complexed with cmu, edo, fmt, po4
      2. 3085983Domain d6wxca1: 6wxc A:2-191 [386045]
        Other proteins in same PDB: d6wxca2, d6wxca3, d6wxcb2, d6wxcb3
        automated match to d2rhba1
        complexed with cmu, edo, fmt, po4
    10. Domains for 6x4i:
      1. 3086952Domain d6x4ib1: 6x4i B:2-191 [387014]
        Other proteins in same PDB: d6x4ia2, d6x4ia3, d6x4ib2, d6x4ib3
        automated match to d2rhba1
        complexed with edo, na, u3p
      2. 3087037Domain d6x4ia1: 6x4i A:2-191 [387099]
        Other proteins in same PDB: d6x4ia2, d6x4ia3, d6x4ib2, d6x4ib3
        automated match to d2rhba1
        complexed with edo, na, u3p
    11. Domains for 6xdh:
      1. 3088016Domain d6xdhb1: 6xdh B:2-191 [388078]
        Other proteins in same PDB: d6xdha2, d6xdha3, d6xdhb2, d6xdhb3
        automated match to d2rhba1
        complexed with act, cit, edo, fmt
      2. 3088026Domain d6xdha1: 6xdh A:2-191 [388088]
        Other proteins in same PDB: d6xdha2, d6xdha3, d6xdhb2, d6xdhb3
        automated match to d2rhba1
        complexed with act, cit, edo, fmt
    12. Domains for 7k1l:
      1. 3090308Domain d7k1lb1: 7k1l B:2-191 [390370]
        Other proteins in same PDB: d7k1la2, d7k1la3, d7k1lb2, d7k1lb3
        automated match to d2rhba1
        complexed with act, edo, so4, uvc
      2. 3090342Domain d7k1la1: 7k1l A:2-191 [390404]
        Other proteins in same PDB: d7k1la2, d7k1la3, d7k1lb2, d7k1lb3
        automated match to d2rhba1
        complexed with act, edo, so4, uvc
    13. Domains for 7k1o:
      1. 3090332Domain d7k1oa1: 7k1o A:2-191 [390394]
        Other proteins in same PDB: d7k1oa2, d7k1oa3, d7k1ob2, d7k1ob3, d7k1oc2, d7k1oc3
        automated match to d2rhba1
        complexed with edo, vqv
      2. 3090335Domain d7k1ob1: 7k1o B:2-191 [390397]
        Other proteins in same PDB: d7k1oa2, d7k1oa3, d7k1ob2, d7k1ob3, d7k1oc2, d7k1oc3
        automated match to d2rhba1
        complexed with edo, vqv
      3. 3090398Domain d7k1oc1: 7k1o C:2-191 [390460]
        Other proteins in same PDB: d7k1oa2, d7k1oa3, d7k1ob2, d7k1ob3, d7k1oc2, d7k1oc3
        automated match to d2rhba1
        complexed with edo, vqv
    14. Domains for 7k9p:
      1. 3090370Domain d7k9pa1: 7k9p A:2-191 [390432]
        Other proteins in same PDB: d7k9pa2, d7k9pa3, d7k9pb2, d7k9pb3
        automated match to d2rhba1
        complexed with cit
      2. 3090408Domain d7k9pb1: 7k9p B:2-191 [390470]
        Other proteins in same PDB: d7k9pa2, d7k9pa3, d7k9pb2, d7k9pb3
        automated match to d2rhba1
        complexed with cit
    15. Domains for 7keg:
      1. 3094897Domain d7kegb1: 7keg B:1-190 [394959]
        Other proteins in same PDB: d7kega2, d7kega3, d7kegb2, d7kegb3
        automated match to d2rhba1
        complexed with po4
      2. 3094920Domain d7kega1: 7keg A:1-190 [394982]
        Other proteins in same PDB: d7kega2, d7kega3, d7kegb2, d7kegb3
        automated match to d2rhba1
        complexed with po4
    16. Domains for 7keh:
      1. 3094914Domain d7kehb1: 7keh B:1-190 [394976]
        Other proteins in same PDB: d7keha2, d7keha3, d7kehb2, d7kehb3
        automated match to d2rhba1
        complexed with b3p, so4
      2. 3094917Domain d7keha1: 7keh A:1-190 [394979]
        Other proteins in same PDB: d7keha2, d7keha3, d7kehb2, d7kehb3
        automated match to d2rhba1
        complexed with b3p, so4
    17. Domains for 7kf4:
      1. 3094859Domain d7kf4e1: 7kf4 E:1-190 [394921]
        Other proteins in same PDB: d7kf4a2, d7kf4a3, d7kf4b2, d7kf4b3, d7kf4c2, d7kf4c3, d7kf4d2, d7kf4d3, d7kf4e2, d7kf4e3, d7kf4f2, d7kf4f3
        automated match to d2rhba1
        complexed with cit
      2. 3094862Domain d7kf4a1: 7kf4 A:1-190 [394924]
        Other proteins in same PDB: d7kf4a2, d7kf4a3, d7kf4b2, d7kf4b3, d7kf4c2, d7kf4c3, d7kf4d2, d7kf4d3, d7kf4e2, d7kf4e3, d7kf4f2, d7kf4f3
        automated match to d2rhba1
        complexed with cit
      3. 3094905Domain d7kf4d1: 7kf4 D:1-190 [394967]
        Other proteins in same PDB: d7kf4a2, d7kf4a3, d7kf4b2, d7kf4b3, d7kf4c2, d7kf4c3, d7kf4d2, d7kf4d3, d7kf4e2, d7kf4e3, d7kf4f2, d7kf4f3
        automated match to d2rhba1
        complexed with cit
      4. 3094956Domain d7kf4b1: 7kf4 B:1-190 [395018]
        Other proteins in same PDB: d7kf4a2, d7kf4a3, d7kf4b2, d7kf4b3, d7kf4c2, d7kf4c3, d7kf4d2, d7kf4d3, d7kf4e2, d7kf4e3, d7kf4f2, d7kf4f3
        automated match to d2rhba1
        complexed with cit
      5. 3095014Domain d7kf4c1: 7kf4 C:1-190 [395076]
        Other proteins in same PDB: d7kf4a2, d7kf4a3, d7kf4b2, d7kf4b3, d7kf4c2, d7kf4c3, d7kf4d2, d7kf4d3, d7kf4e2, d7kf4e3, d7kf4f2, d7kf4f3
        automated match to d2rhba1
        complexed with cit
      6. 3095040Domain d7kf4f1: 7kf4 F:1-190 [395102]
        Other proteins in same PDB: d7kf4a2, d7kf4a3, d7kf4b2, d7kf4b3, d7kf4c2, d7kf4c3, d7kf4d2, d7kf4d3, d7kf4e2, d7kf4e3, d7kf4f2, d7kf4f3
        automated match to d2rhba1
        complexed with cit
    18. Domains for 7me0:
      1. 3103571Domain d7me0c1: 7me0 C:1-190 [403633]
        Other proteins in same PDB: d7me0a2, d7me0a3, d7me0b2, d7me0b3, d7me0c2, d7me0c3, d7me0d2, d7me0d3, d7me0e2, d7me0e3, d7me0f2, d7me0f3
        automated match to d2rhba1
      2. 3103577Domain d7me0f1: 7me0 F:1-190 [403639]
        Other proteins in same PDB: d7me0a2, d7me0a3, d7me0b2, d7me0b3, d7me0c2, d7me0c3, d7me0d2, d7me0d3, d7me0e2, d7me0e3, d7me0f2, d7me0f3
        automated match to d2rhba1
      3. 3103618Domain d7me0b1: 7me0 B:1-190 [403680]
        Other proteins in same PDB: d7me0a2, d7me0a3, d7me0b2, d7me0b3, d7me0c2, d7me0c3, d7me0d2, d7me0d3, d7me0e2, d7me0e3, d7me0f2, d7me0f3
        automated match to d2rhba1
      4. 3103677Domain d7me0d1: 7me0 D:1-190 [403739]
        Other proteins in same PDB: d7me0a2, d7me0a3, d7me0b2, d7me0b3, d7me0c2, d7me0c3, d7me0d2, d7me0d3, d7me0e2, d7me0e3, d7me0f2, d7me0f3
        automated match to d2rhba1
      5. 3103741Domain d7me0a1: 7me0 A:1-190 [403803]
        Other proteins in same PDB: d7me0a2, d7me0a3, d7me0b2, d7me0b3, d7me0c2, d7me0c3, d7me0d2, d7me0d3, d7me0e2, d7me0e3, d7me0f2, d7me0f3
        automated match to d2rhba1
      6. 3103804Domain d7me0e1: 7me0 E:1-190 [403866]
        Other proteins in same PDB: d7me0a2, d7me0a3, d7me0b2, d7me0b3, d7me0c2, d7me0c3, d7me0d2, d7me0d3, d7me0e2, d7me0e3, d7me0f2, d7me0f3
        automated match to d2rhba1

More info for Protein automated matches from c.66.1.48: Nsp15 N-terminal domain-like

Timeline for Protein automated matches from c.66.1.48: Nsp15 N-terminal domain-like:

  • Protein automated matches from c.66.1.48: Nsp15 N-terminal domain-like is new in SCOPe 2.07-stable