SCOPe 2.08: Domain d6pcub_: 6pcu B:

Lineage for d6pcub_ (6pcu B:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (5 families)

5. Family b.1.1.0: automated matches [191470] (1 protein)
   not a true family

6. Protein automated matches [190740] (31 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [187920] (1793 PDB entries)

8. Domain d6pcub_: 6pcu B: [373736]
   Other proteins in same PDB: d6pcua1, d6pcua2, d6pcud1, d6pcud2, d6pcug1, d6pcug2
   automated match to d4y5ve_
   complexed with gol, so4

Details for d6pcub_

PDB Entry: 6pcu, 2.4 Å

PDB Description: vp8* of a g2p[4] human rotavirus in complex with scfv antibody 9

PDB Compounds: (B:) Variable domain of antibody scFv9

SCOPe Domain Sequences for d6pcub_:

Sequence, based on SEQRES records:

>d6pcub_ b.1.1.0 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
sqpvltqppsasaslgasvtltctlssgysnykvdwyqqrpgkgprfvmrvgtggivgsk
gdgiadrfsvsgsglnrsltikniqeedesdyhcgadhgsgdnfvrvfgggtkltvlggg
gsggggsggggsqvqlqesgpglvkpsqtlsltcsvsgvslsggsytwnwirqpagkgle
wigriftsgstnynpslkgrltmsidtsknqlslrlssvtaadtavyycvadyyysvpdv
wgqgtpvtvs

Sequence, based on observed residues (ATOM records):

>d6pcub_ b.1.1.0 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
sqpvltqppsasaslgasvtltctlssgysnykvdwyqqrpgkgprfvmrvgtggivgsk
gdgiadrfsvsgsglnrsltikniqeedesdyhcgadhgsgdnfvrvfgggtkltvlqvq
lqesgpglvkpsqtlsltcsvsgvslsggsytwnwirqpagkglewigriftsgstnynp
slkgrltmsidtsknqlslrlssvtaadtavyycvadyyysvpdvwgqgtpvtvs

Timeline for d6pcub_:

• d6pcub_ first appeared in SCOPe 2.07