Lineage for d6njdc1 (6njd C:1-75)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2501110Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2501111Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2501112Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
    Pfam PF00240
  6. 2501389Protein Ubiquitin [54238] (9 species)
  7. 2501491Species Human (Homo sapiens) [TaxId:9606] [54239] (296 PDB entries)
    Uniprot P62988
    identical sequence in many other species
  8. 3069085Domain d6njdc1: 6njd C:1-75 [369147]
    Other proteins in same PDB: d6njda3
    automated match to d4k1rb_
    complexed with mg

Details for d6njdc1

PDB Entry: 6njd (more details), 2.05 Å

PDB Description: crystal structure of ravd (residues 1-200) from legionella pneumophila (strain corby) complexed with met-1 linked di-ubiquitin
PDB Compounds: (C:) di-ubiquitin

SCOPe Domain Sequences for d6njdc1:

Sequence, based on SEQRES records: (download)

>d6njdc1 d.15.1.1 (C:1-75) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrs

Sequence, based on observed residues (ATOM records): (download)

>d6njdc1 d.15.1.1 (C:1-75) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
mqvktltgkttlvepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyniqtl
hlvlrlrs

SCOPe Domain Coordinates for d6njdc1:

Click to download the PDB-style file with coordinates for d6njdc1.
(The format of our PDB-style files is described here.)

Timeline for d6njdc1:

  • d6njdc1 is new in SCOPe 2.07-stable