SCOPe 2.08: Domain d6q54a1: 6q54 A:3-264

Lineage for d6q54a1 (6q54 A:3-264)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)
   has additional insertions and/or extensions that are not grouped together
   

6. Protein Glutamate receptor ligand binding core [53881] (5 species)

7. Species Norway rat (Rattus norvegicus), GluR2 [TaxId:10116] [53882] (158 PDB entries)

8. Domain d6q54a1: 6q54 A:3-264 [367890]
   Other proteins in same PDB: d6q54a2, d6q54b2
   automated match to d4h8ja_
   complexed with cit, cl, gol, hj8, li, peg, pge, so4

Details for d6q54a1

PDB Entry: 6q54, 1.4 Å

PDB Description: structure of glua2 ligand-binding domain (s1s2j) in complex with the agonist (s)-2-amino-3-(1-ethyl-4-hydroxy-1h-1,2,3-triazol-5-yl) propanoic acid at 1.4 a resolution

PDB Compounds: (A:) Glutamate receptor 2

SCOPe Domain Sequences for d6q54a1:

Sequence; same for both SEQRES and ATOM records:

>d6q54a1 c.94.1.1 (A:3-264) Glutamate receptor ligand binding core {Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]}
nktvvvttilespyvmmkknhemlegneryegycvdlaaeiakhcgfkykltivgdgkyg
ardadtkiwngmvgelvygkadiaiapltitlvreevidfskpfmslgisimikkgtpie
saedlskqteiaygtldsgstkeffrrskiavfdkmwtymrsaepsvfvrttaegvarvr
kskgkyayllestmneyieqrkpcdtmkvggnldskgygiatpkgsslgnavnlavlkln
eqglldklknkwwydkgecgsg

Timeline for d6q54a1:

• d6q54a1 first appeared in SCOPe 2.07