SCOPe 2.08: Domain d5ymya_: 5ymy A:

Lineage for d5ymya_ (5ymy A:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.15: beta-Grasp (ubiquitin-like) [54235] (15 superfamilies)
   core: beta(2)-alpha-beta(2); mixed beta-sheet 2143

4. Superfamily d.15.1: Ubiquitin-like [54236] (11 families)

5. Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
   Pfam PF00240

6. Protein Ubiquitin [54238] (9 species)

7. Species Human (Homo sapiens) [TaxId:9606] [54239] (312 PDB entries)
   Uniprot P62988
   identical sequence in many other species

8. Domain d5ymya_: 5ymy A: [366299]
   automated match to d4k1rb_

Details for d5ymya_

PDB Entry: 5ymy

PDB Description: the structure of the complex between rpn13 and k48-diub

PDB Compounds: (A:) Ubiquitin

SCOPe Domain Sequences for d5ymya_:

Sequence; same for both SEQRES and ATOM records:

>d5ymya_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

Timeline for d5ymya_:

• d5ymya_ first appeared in SCOPe 2.07