Lineage for d6etva_ (6etv A:)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2403751Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2404605Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. 2404954Family b.82.2.14: Histone demethylase core [254153] (4 proteins)
    Jumonji domain; Pfam PF02375 (JmjN) and Pfam PF02373 (JmjC); relationship to FIH1 (b.82.2.6) described in PubMed 16983801
  6. 2405069Protein JMJD2D core [254343] (1 species)
  7. 2405070Species Human (Homo sapiens) [TaxId:9606] [254776] (16 PDB entries)
  8. 3065199Domain d6etva_: 6etv A: [365261]
    automated match to d3dxua_
    complexed with bxe, cl, edo, epe, gol, na, ni, so4, zn

Details for d6etva_

PDB Entry: 6etv (more details), 1.18 Å

PDB Description: crystal structure of kdm4d with tetrazolhydrazide compound 2
PDB Compounds: (A:) Lysine-specific demethylase 4D

SCOPe Domain Sequences for d6etva_:

Sequence; same for both SEQRES and ATOM records: (download)

>d6etva_ b.82.2.14 (A:) JMJD2D core {Human (Homo sapiens) [TaxId: 9606]}
aqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkaretydniseil
iatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfedlerkywknri
ynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpylyfgmwkttfa
whtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcgaflrhkvalis
ptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprwidygkmasqc
scgearvtfsmdafvrilqperydlwkrgq

SCOPe Domain Coordinates for d6etva_:

Click to download the PDB-style file with coordinates for d6etva_.
(The format of our PDB-style files is described here.)

Timeline for d6etva_:

  • d6etva_ appears in periodic updates to SCOPe 2.07 starting on 2019-02-28