SCOPe 2.08: Domain d6nd3d_: 6nd3 D:

Lineage for d6nd3d_ (6nd3 D:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.7: PFL-like glycyl radical enzymes [51997] (1 superfamily)
   contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel

4. Superfamily c.7.1: PFL-like glycyl radical enzymes [51998] (6 families)
   duplication: the N- and C-terminal halves have similar topologies

5. Family c.7.1.0: automated matches [275322] (1 protein)
   not a true family

6. Protein automated matches [275324] (7 species)
   not a true protein

7. Species Desulfovibrio alaskensis [TaxId:207559] [323257] (7 PDB entries)

8. Domain d6nd3d_: 6nd3 D: [362616]
   automated match to d5faub_
   complexed with btl

Details for d6nd3d_

PDB Entry: 6nd3, 2.36 Å

PDB Description: wild-type choline tma lyase in complex with betaine aldehyde

PDB Compounds: (D:) Choline trimethylamine-lyase

SCOPe Domain Sequences for d6nd3d_:

Sequence; same for both SEQRES and ATOM records:

>d6nd3d_ c.7.1.0 (D:) automated matches {Desulfovibrio alaskensis [TaxId: 207559]}
esgipdgptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfryccet
aplviqdhelivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlre
evfpfwqnksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgm
ldiqrearekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdpr
rkaelqkisevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyr
adidsgrlteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghda
tndltymlmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikm
mlakgvsiedardyclmgcvepqksgrlyqwtstgytqwpicielvlnhgvplwygkkvt
pdmgdlsqydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmes
grdvsaggamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydq
iladclaapkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqll
gasangrrawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldt
pegenglitlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelc
kdvqdeiisrtmlhgf

Timeline for d6nd3d_:

• d6nd3d_ first appeared in SCOPe 2.07