SCOPe 2.07: Domain d6nd3a_: 6nd3 A:

Lineage for d6nd3a_ (6nd3 A:)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.7: PFL-like glycyl radical enzymes [51997] (1 superfamily)
   contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel

4. Superfamily c.7.1: PFL-like glycyl radical enzymes [51998] (6 families)
   duplication: the N- and C-terminal halves have similar topologies

5. Family c.7.1.0: automated matches [275322] (1 protein)
   not a true family

6. Protein automated matches [275324] (4 species)
   not a true protein

7. Species Desulfovibrio alaskensis [TaxId:207559] [323257] (6 PDB entries)

8. Domain d6nd3a_: 6nd3 A: [362307]
   automated match to d5faub_
   complexed with btl

Details for d6nd3a_

PDB Entry: 6nd3, 2.36 Å

PDB Description: wild-type choline tma lyase in complex with betaine aldehyde

PDB Compounds: (A:) Choline trimethylamine-lyase

SCOPe Domain Sequences for d6nd3a_:

Sequence; same for both SEQRES and ATOM records:

>d6nd3a_ c.7.1.0 (A:) automated matches {Desulfovibrio alaskensis [TaxId: 207559]}
sgipdgptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfrycceta
plviqdhelivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlree
vfpfwqnksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgml
diqrearekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprr
kaelqkisevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyra
didsgrlteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdat
ndltymlmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmm
lakgvsiedardyclmgcvepqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtp
dmgdlsqydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesg
rdvsaggamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqi
ladclaapkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllg
asangrrawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtp
egenglitlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelck
dvqdeiisrtmlhgf

Timeline for d6nd3a_:

• d6nd3a_ appears in periodic updates to SCOPe 2.07 starting on 2019-01-17