Lineage for Species: Ruminococcus gnavus [TaxId: 33038]

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2416558Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2418840Family c.1.8.0: automated matches [191314] (1 protein)
    not a true family
  6. 2418841Protein automated matches [190075] (103 species)
    not a true protein
  7. 3061187Species Ruminococcus gnavus [TaxId:33038] [361249] (2 PDB entries)

PDB entries in Species: Ruminococcus gnavus [TaxId: 33038]:

  1. Domain(s) for 5z18:
    1. 3061188Domain d5z18e3: 5z18 E:279-599 [361250]
      Other proteins in same PDB: d5z18a1, d5z18a2, d5z18b1, d5z18b2, d5z18c1, d5z18c2, d5z18d1, d5z18d2, d5z18e1, d5z18e2, d5z18f1, d5z18f2
      automated match to d5c70a3
    2. 3061214Domain d5z18d3: 5z18 D:279-603 [361276]
      Other proteins in same PDB: d5z18a1, d5z18a2, d5z18b1, d5z18b2, d5z18c1, d5z18c2, d5z18d1, d5z18d2, d5z18e1, d5z18e2, d5z18f1, d5z18f2
      automated match to d5c70a3
    3. 3061226Domain d5z18a3: 5z18 A:279-597 [361288]
      Other proteins in same PDB: d5z18a1, d5z18a2, d5z18b1, d5z18b2, d5z18c1, d5z18c2, d5z18d1, d5z18d2, d5z18e1, d5z18e2, d5z18f1, d5z18f2
      automated match to d5c70a3
    4. 3061257Domain d5z18c3: 5z18 C:279-599 [361319]
      Other proteins in same PDB: d5z18a1, d5z18a2, d5z18b1, d5z18b2, d5z18c1, d5z18c2, d5z18d1, d5z18d2, d5z18e1, d5z18e2, d5z18f1, d5z18f2
      automated match to d5c70a3
    5. 3061262Domain d5z18b3: 5z18 B:279-597 [361324]
      Other proteins in same PDB: d5z18a1, d5z18a2, d5z18b1, d5z18b2, d5z18c1, d5z18c2, d5z18d1, d5z18d2, d5z18e1, d5z18e2, d5z18f1, d5z18f2
      automated match to d5c70a3
    6. 3061270Domain d5z18f3: 5z18 F:279-597 [361332]
      Other proteins in same PDB: d5z18a1, d5z18a2, d5z18b1, d5z18b2, d5z18c1, d5z18c2, d5z18d1, d5z18d2, d5z18e1, d5z18e2, d5z18f1, d5z18f2
      automated match to d5c70a3
  2. Domain(s) for 6ec6:
    1. 3064736Domain d6ec6b3: 6ec6 B:279-600 [364798]
      Other proteins in same PDB: d6ec6a1, d6ec6a2, d6ec6b1, d6ec6b2
      automated match to d5c70a3
      complexed with cl, gol
    2. 3064834Domain d6ec6a3: 6ec6 A:279-597 [364896]
      Other proteins in same PDB: d6ec6a1, d6ec6a2, d6ec6b1, d6ec6b2
      automated match to d5c70a3
      complexed with cl, gol

More info for Species Ruminococcus gnavus [TaxId:33038] from c.1.8.0 automated matches

Timeline for Species Ruminococcus gnavus [TaxId:33038] from c.1.8.0 automated matches:

  • Species Ruminococcus gnavus [TaxId:33038] from c.1.8.0 automated matches appears in periodic updates to SCOPe 2.07 starting on 2018-12-13